miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 12637 0.73 0.300099
Target:  5'- aGUCCGgcgcggUCUGgGGC-CGCGC-CGGCGCg -3'
miRNA:   3'- -CAGGC------AGACgUCGaGCGUGcGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 12788 0.66 0.713702
Target:  5'- -cUCGUCgGCgAGCUCGU-CGuCGGCGUc -3'
miRNA:   3'- caGGCAGaCG-UCGAGCGuGC-GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 12879 0.69 0.50613
Target:  5'- --aCGUCgaGCGGCUCGUugGuCGGCa- -3'
miRNA:   3'- cagGCAGa-CGUCGAGCGugC-GCCGcg -5'
23596 5' -60.2 NC_005261.1 + 13087 0.65 0.729233
Target:  5'- -cCCGUCgGCgggcggcgggcucGGCUCGggggcgucggcggcCGCGgGGCGCg -3'
miRNA:   3'- caGGCAGaCG-------------UCGAGC--------------GUGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 14427 0.68 0.554486
Target:  5'- -gCUGUCUcacggaacuCGGCUCGCucGCGgGGCGCg -3'
miRNA:   3'- caGGCAGAc--------GUCGAGCG--UGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 14866 0.71 0.424183
Target:  5'- -aUCG-C-GCAGUUCGCcauCGCGGCGCa -3'
miRNA:   3'- caGGCaGaCGUCGAGCGu--GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 16993 0.71 0.432902
Target:  5'- gGUCCG-CgauCAGCgccagcaugUCGCACGCGGcCGCg -3'
miRNA:   3'- -CAGGCaGac-GUCG---------AGCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 19818 0.67 0.614123
Target:  5'- -gCCGgucgaUGCaaaaguucAGCgCGCGCGCGGCGUc -3'
miRNA:   3'- caGGCag---ACG--------UCGaGCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 20536 0.66 0.670218
Target:  5'- cUCCGaccgcgcUCUGCuggacguggcggcgGGCUgCGCA-GCGGCGCc -3'
miRNA:   3'- cAGGC-------AGACG--------------UCGA-GCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 20951 0.67 0.634178
Target:  5'- cUCCGgCUGUuuacgAGgUCGUggaccgcgGCGCGGCGCc -3'
miRNA:   3'- cAGGCaGACG-----UCgAGCG--------UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 21168 0.66 0.723431
Target:  5'- -gCCGagcagagaUGCAGC-CGCugGCGCGaGCGCg -3'
miRNA:   3'- caGGCag------ACGUCGaGCG--UGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 21679 0.7 0.459668
Target:  5'- cUCCGgCUGgGGCUCGaGCGCGuCGCg -3'
miRNA:   3'- cAGGCaGACgUCGAGCgUGCGCcGCG- -5'
23596 5' -60.2 NC_005261.1 + 21771 0.68 0.574225
Target:  5'- -gCCGg--GCgAGC-CGC-CGCGGCGCg -3'
miRNA:   3'- caGGCagaCG-UCGaGCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 22642 0.69 0.50613
Target:  5'- -cCCGUCccUAGacgCGCugGCGGCGCc -3'
miRNA:   3'- caGGCAGacGUCga-GCGugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 23309 0.66 0.723431
Target:  5'- -cCCGUaugGCcgagcagaaagaAGCcgacgaGCGCGCGGCGCa -3'
miRNA:   3'- caGGCAga-CG------------UCGag----CGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 29228 0.66 0.703907
Target:  5'- -cCCG-C-GCAGgCUaCGC-CGCGGCGCc -3'
miRNA:   3'- caGGCaGaCGUC-GA-GCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 29395 0.7 0.487288
Target:  5'- aUCCG-CgagGCGGCcgcgCGCuACGCGGCGg -3'
miRNA:   3'- cAGGCaGa--CGUCGa---GCG-UGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 29553 0.77 0.182305
Target:  5'- -cCCGgacCUGCAGCUgGCGCGCcugcugcagcGGCGCg -3'
miRNA:   3'- caGGCa--GACGUCGAgCGUGCG----------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 29752 0.66 0.723431
Target:  5'- uUCCucCUGCAGa--GCcUGCGGCGCg -3'
miRNA:   3'- cAGGcaGACGUCgagCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 29839 0.73 0.328294
Target:  5'- -gCCGagCUGCGcgccguGCUCGCcggccGCGCGGCGCc -3'
miRNA:   3'- caGGCa-GACGU------CGAGCG-----UGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.