miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 30206 0.74 0.273813
Target:  5'- -gCUGgagGCGGCcgCGCugGCGGCGCg -3'
miRNA:   3'- caGGCagaCGUCGa-GCGugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 30242 0.71 0.424183
Target:  5'- -cCCG-CUggcGCGGUacUCGaCGCGCGGCGCg -3'
miRNA:   3'- caGGCaGA---CGUCG--AGC-GUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 30966 0.66 0.68415
Target:  5'- -cCCGcCgcgaCGGCcCGC-CGCGGCGCa -3'
miRNA:   3'- caGGCaGac--GUCGaGCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 31345 0.69 0.534953
Target:  5'- -gCCG-CUGCGGCg-GCGCGUGGCc- -3'
miRNA:   3'- caGGCaGACGUCGagCGUGCGCCGcg -5'
23596 5' -60.2 NC_005261.1 + 31420 0.7 0.487288
Target:  5'- -cCCG-CUGCccggGGaggCGCugGCGGCGCc -3'
miRNA:   3'- caGGCaGACG----UCga-GCGugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 31486 0.67 0.664228
Target:  5'- -gCCGgugCgcgGCGGgcuCUCGCAccugcuCGCGGCGCu -3'
miRNA:   3'- caGGCa--Ga--CGUC---GAGCGU------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 31614 0.67 0.634178
Target:  5'- --gCGUgCUGCuGCUCGCgACGCGGgaccuggccuucCGCg -3'
miRNA:   3'- cagGCA-GACGuCGAGCG-UGCGCC------------GCG- -5'
23596 5' -60.2 NC_005261.1 + 31667 0.82 0.080668
Target:  5'- cUCUGcCUGCGGCUgGC-CGCGGCGCg -3'
miRNA:   3'- cAGGCaGACGUCGAgCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 31751 0.68 0.574225
Target:  5'- -gCCGUCggGCAGg-CGCACGUGuaccuGCGCg -3'
miRNA:   3'- caGGCAGa-CGUCgaGCGUGCGC-----CGCG- -5'
23596 5' -60.2 NC_005261.1 + 31930 0.68 0.554486
Target:  5'- -gCCG-CUG-GGCUCuGC-CGCGGCGCc -3'
miRNA:   3'- caGGCaGACgUCGAG-CGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 32160 0.69 0.538841
Target:  5'- -gCCG-CUGCGGCcgguguaccuggccUGCGgGCGGCGCg -3'
miRNA:   3'- caGGCaGACGUCGa-------------GCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 32251 0.69 0.525277
Target:  5'- -gCCGcgCUGCuggAGC-CGCACGCcgaGGCGCc -3'
miRNA:   3'- caGGCa-GACG---UCGaGCGUGCG---CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 32729 0.68 0.604112
Target:  5'- -cCCGUCUcCGuccGCUCuGCGCGCGGCccGCc -3'
miRNA:   3'- caGGCAGAcGU---CGAG-CGUGCGCCG--CG- -5'
23596 5' -60.2 NC_005261.1 + 34370 0.69 0.525277
Target:  5'- -gCCG-C-GCGGCgccgCGCgcagACGCGGCGCa -3'
miRNA:   3'- caGGCaGaCGUCGa---GCG----UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 35123 0.73 0.335642
Target:  5'- -gCCGcCgGCGGCgUCGCAccccgccccCGCGGCGCa -3'
miRNA:   3'- caGGCaGaCGUCG-AGCGU---------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 36935 0.7 0.441724
Target:  5'- cUCCGgggccCUGCgcuggcgcaaGGCcCGcCGCGCGGCGCa -3'
miRNA:   3'- cAGGCa----GACG----------UCGaGC-GUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 37188 0.68 0.564333
Target:  5'- -gCUG-CUgGCGGCgcuGCugGCGGCGCu -3'
miRNA:   3'- caGGCaGA-CGUCGag-CGugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 37224 0.66 0.68415
Target:  5'- -cCCG-Cg--GGCUUGCgcgGCGCGGCGCg -3'
miRNA:   3'- caGGCaGacgUCGAGCG---UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 37354 0.67 0.624147
Target:  5'- aUCCG-CgggcGguGCUCGCcgcccgAgGCGGCGCu -3'
miRNA:   3'- cAGGCaGa---CguCGAGCG------UgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 38273 0.72 0.3584
Target:  5'- -gCUGgggGCGGCUggUGCACGCGGUGCu -3'
miRNA:   3'- caGGCagaCGUCGA--GCGUGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.