miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 39027 0.74 0.261376
Target:  5'- cGUCCG-CgaGCAGCUC-CACGCGGUGa -3'
miRNA:   3'- -CAGGCaGa-CGUCGAGcGUGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 39336 0.66 0.68415
Target:  5'- -gCCG-CcGCGGCcaagcUGCGCGCGGCGg -3'
miRNA:   3'- caGGCaGaCGUCGa----GCGUGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 39439 0.68 0.584156
Target:  5'- --gCGUCcGCAGggccccgagcCUC-CGCGCGGCGCg -3'
miRNA:   3'- cagGCAGaCGUC----------GAGcGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 39887 0.67 0.634178
Target:  5'- -gCCGcgcgcgcggcUgUGCAGCUggCGCGCGCGGcCGUc -3'
miRNA:   3'- caGGC----------AgACGUCGA--GCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 40652 0.66 0.703907
Target:  5'- cGUCCagcGUCgacaGCAGCUcCGCgACGCcgucggggagccGGCGCc -3'
miRNA:   3'- -CAGG---CAGa---CGUCGA-GCG-UGCG------------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 40760 0.66 0.707833
Target:  5'- uGUCgGUCUGCAGUgccauggagaccaGCcCGCcGCGCa -3'
miRNA:   3'- -CAGgCAGACGUCGag-----------CGuGCGcCGCG- -5'
23596 5' -60.2 NC_005261.1 + 41108 0.69 0.544691
Target:  5'- -gUCGUCcGCGGCgggcccgagCGCuuccuGCGUGGCGCg -3'
miRNA:   3'- caGGCAGaCGUCGa--------GCG-----UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 42599 0.67 0.614123
Target:  5'- --gCGgcaaaagGCAGCUCGC--GCGGCGCa -3'
miRNA:   3'- cagGCaga----CGUCGAGCGugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 43368 0.67 0.623145
Target:  5'- -gCCG-CUGCGGCg-GCAucggccuCGCGGUGCc -3'
miRNA:   3'- caGGCaGACGUCGagCGU-------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 44960 0.68 0.604112
Target:  5'- -cCUG-CUGCGGgaCGCGCGCGaGgGCc -3'
miRNA:   3'- caGGCaGACGUCgaGCGUGCGC-CgCG- -5'
23596 5' -60.2 NC_005261.1 + 45091 0.66 0.673209
Target:  5'- cGUCCGUCacgcgccugcgcgUGgAGCcggGCACG-GGCGCg -3'
miRNA:   3'- -CAGGCAG-------------ACgUCGag-CGUGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 45392 0.67 0.654225
Target:  5'- -cCUGUUcgUGCAGCugUCGUGCcugcuGCGGCGCc -3'
miRNA:   3'- caGGCAG--ACGUCG--AGCGUG-----CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 45587 0.66 0.683157
Target:  5'- -cCCGUCggugaucacgGCgaucuaccacaccGGCggCGCgGCGCGGCGCg -3'
miRNA:   3'- caGGCAGa---------CG-------------UCGa-GCG-UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 46534 0.68 0.604112
Target:  5'- cUCCG-CUGCGcGCUgGCagucgucccgcaGCGCGaGCGCu -3'
miRNA:   3'- cAGGCaGACGU-CGAgCG------------UGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 46801 0.74 0.261376
Target:  5'- -cCCGUC-GCGGCgCGCGCGgaUGGCGCg -3'
miRNA:   3'- caGGCAGaCGUCGaGCGUGC--GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 47883 0.69 0.525277
Target:  5'- cGUCCGgggaGCGGCg-GCG-GCGGCGCg -3'
miRNA:   3'- -CAGGCaga-CGUCGagCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 47930 0.73 0.335642
Target:  5'- cGUCaCGUCccGCGcGC-CGCGCGCGaGCGCg -3'
miRNA:   3'- -CAG-GCAGa-CGU-CGaGCGUGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 48319 0.66 0.723431
Target:  5'- --gCGUCggGCccgGGCUcgggggCGCGCGCGGCGa -3'
miRNA:   3'- cagGCAGa-CG---UCGA------GCGUGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 48432 0.68 0.604112
Target:  5'- -gCgGUa--CAGCUCGCgguGCGUGGCGCg -3'
miRNA:   3'- caGgCAgacGUCGAGCG---UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 48801 0.66 0.703907
Target:  5'- cUCCGUga--GGC-CGUGCGCGGCGUc -3'
miRNA:   3'- cAGGCAgacgUCGaGCGUGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.