miRNA display CGI


Results 81 - 100 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 49251 0.66 0.703907
Target:  5'- -gCCGcCgcgGCGGCgucggcgCGCACGUccgcgaggaaGGCGCa -3'
miRNA:   3'- caGGCaGa--CGUCGa------GCGUGCG----------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 49764 0.69 0.544691
Target:  5'- -aCCGUCgUGUAGaUCaGCACGCGGaCGUc -3'
miRNA:   3'- caGGCAG-ACGUCgAG-CGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 50621 0.67 0.644206
Target:  5'- -cCCGaUUGguGCUC-CACGCGG-GCg -3'
miRNA:   3'- caGGCaGACguCGAGcGUGCGCCgCG- -5'
23596 5' -60.2 NC_005261.1 + 50850 0.66 0.703907
Target:  5'- --gCGcCUGUGGCUCGCccAgGuCGGCGCc -3'
miRNA:   3'- cagGCaGACGUCGAGCG--UgC-GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 50991 0.66 0.703907
Target:  5'- -gCCGaCgGCGGCgCGUggGCGCGGCGg -3'
miRNA:   3'- caGGCaGaCGUCGaGCG--UGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 51285 0.68 0.564333
Target:  5'- -gCCGUCcuggccGCGGCcaccuaccucgCGCACGCcGGCGCc -3'
miRNA:   3'- caGGCAGa-----CGUCGa----------GCGUGCG-CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 51810 0.71 0.430275
Target:  5'- -cUCGUgCUGCGGCUggUGCGCGCcugccugcaccaccGGCGCa -3'
miRNA:   3'- caGGCA-GACGUCGA--GCGUGCG--------------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 52204 0.69 0.544691
Target:  5'- -cCCG-CgGCGGCUCaGUAcaccuCGCGGCGCu -3'
miRNA:   3'- caGGCaGaCGUCGAG-CGU-----GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 53009 0.75 0.255333
Target:  5'- --gCGUCggcGCAGCUCGCcagcgcuucCGCGGCGCc -3'
miRNA:   3'- cagGCAGa--CGUCGAGCGu--------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 53050 0.66 0.694054
Target:  5'- -gCCGUCgggaggGCAguGCUC-CACcccgggGCGGCGCa -3'
miRNA:   3'- caGGCAGa-----CGU--CGAGcGUG------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 53854 0.66 0.68415
Target:  5'- uUCCGgcaaGC-GCUCcaGCGCGGCGCg -3'
miRNA:   3'- cAGGCaga-CGuCGAGcgUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 53965 0.7 0.478918
Target:  5'- gGUUCGgguggcaaaagagcgCgGCgAGCUCcaGCGCGCGGCGCa -3'
miRNA:   3'- -CAGGCa--------------GaCG-UCGAG--CGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 54131 0.67 0.614123
Target:  5'- -cUCGUCccacgGCAcGC-CGCACGCGGCcguGCg -3'
miRNA:   3'- caGGCAGa----CGU-CGaGCGUGCGCCG---CG- -5'
23596 5' -60.2 NC_005261.1 + 54367 0.67 0.654225
Target:  5'- gGUCCG-CggGCAGCg-GCuCGgGGCGCc -3'
miRNA:   3'- -CAGGCaGa-CGUCGagCGuGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 54486 0.66 0.694054
Target:  5'- --gCGUCggGCGGCaggCGCaaACGCaGGCGCc -3'
miRNA:   3'- cagGCAGa-CGUCGa--GCG--UGCG-CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 55170 0.71 0.39867
Target:  5'- -gCCGcCgGCGGCUCGCgggGCGgauCGGCGCa -3'
miRNA:   3'- caGGCaGaCGUCGAGCG---UGC---GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 56083 0.66 0.694054
Target:  5'- aGUCCG-CUcgcuacuuccaGCGGCUCcuGCGCgaGCGGCGg -3'
miRNA:   3'- -CAGGCaGA-----------CGUCGAG--CGUG--CGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 56432 0.67 0.634178
Target:  5'- -cCCGcCUGCGGag-GCG-GCGGCGCa -3'
miRNA:   3'- caGGCaGACGUCgagCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 57783 0.69 0.534953
Target:  5'- ---aGUCcGCGGCgUCGCGCGgCGGgCGCg -3'
miRNA:   3'- caggCAGaCGUCG-AGCGUGC-GCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 57956 0.69 0.495727
Target:  5'- -cCCGUgUGCgcacgccGGCgacgcaggCGCGCGCGGcCGCg -3'
miRNA:   3'- caGGCAgACG-------UCGa-------GCGUGCGCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.