miRNA display CGI


Results 101 - 120 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 58203 0.7 0.483559
Target:  5'- cUCCGUCagcgcgcgcgccaGCAGCgCGCcCGCGGCGg -3'
miRNA:   3'- cAGGCAGa------------CGUCGaGCGuGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 58884 0.71 0.41557
Target:  5'- gGUCCGg--GCGGgcCUCGCAgGCGcGCGCc -3'
miRNA:   3'- -CAGGCagaCGUC--GAGCGUgCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 59043 0.66 0.68415
Target:  5'- -gCCGcCgcGCgAGCUcagCGCGCGCGGcCGCg -3'
miRNA:   3'- caGGCaGa-CG-UCGA---GCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 59437 0.66 0.713702
Target:  5'- -cCCGgcaggCgccgGCAGCagCGCGgcCGCGGCGUc -3'
miRNA:   3'- caGGCa----Ga---CGUCGa-GCGU--GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 59725 0.68 0.584156
Target:  5'- -gCCGggcgGCAGCggcgGCGCGCGGcCGCc -3'
miRNA:   3'- caGGCaga-CGUCGag--CGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 59934 0.73 0.320349
Target:  5'- -gCCGUCgGCcaucuccAGC-CGCAgCGCGGCGCg -3'
miRNA:   3'- caGGCAGaCG-------UCGaGCGU-GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 61921 0.68 0.604112
Target:  5'- -cCCGUCgaaGguGCacaccuUCGcCACGgGGCGCg -3'
miRNA:   3'- caGGCAGa--CguCG------AGC-GUGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 62198 0.69 0.50613
Target:  5'- -aCCaUgUGCAGCgcgagggUGCGCGCGGcCGCg -3'
miRNA:   3'- caGGcAgACGUCGa------GCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 62291 0.67 0.634178
Target:  5'- aUCaCGUCgGCGccgcGCggGCGCGCGGCGg -3'
miRNA:   3'- cAG-GCAGaCGU----CGagCGUGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 62682 0.7 0.468784
Target:  5'- cGUCCGccagCUGCAcGCgccggCGCAgCGUGGCGa -3'
miRNA:   3'- -CAGGCa---GACGU-CGa----GCGU-GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 63723 0.77 0.177866
Target:  5'- gGUCCGUgaGCGGCgugCGCAuggcCGCGGCGg -3'
miRNA:   3'- -CAGGCAgaCGUCGa--GCGU----GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 64033 0.71 0.407065
Target:  5'- uUCuCGUCggcGCGGCUCuGCgccGCGUGGUGCg -3'
miRNA:   3'- cAG-GCAGa--CGUCGAG-CG---UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 64793 0.67 0.624147
Target:  5'- cGUgCGgc-GCAGCgccguucaCGCGCGCGcGCGCg -3'
miRNA:   3'- -CAgGCagaCGUCGa-------GCGUGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 64838 0.66 0.713702
Target:  5'- gGUCCGcgcgCUGCAGCgccaugaccgcgUCGCGucccagaucaGCGGCGg -3'
miRNA:   3'- -CAGGCa---GACGUCG------------AGCGUg---------CGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 65454 0.67 0.634178
Target:  5'- -gCCGggUGCAGCUCGa--GCGGCa- -3'
miRNA:   3'- caGGCagACGUCGAGCgugCGCCGcg -5'
23596 5' -60.2 NC_005261.1 + 65860 0.67 0.633174
Target:  5'- gGUCCG-CgGCGGCUUGUACagccccaGCGGCa- -3'
miRNA:   3'- -CAGGCaGaCGUCGAGCGUG-------CGCCGcg -5'
23596 5' -60.2 NC_005261.1 + 66587 0.73 0.300099
Target:  5'- -aCCGUCUGCAcgUUGCGCGCgagcugcuggauGGCGCg -3'
miRNA:   3'- caGGCAGACGUcgAGCGUGCG------------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 67108 0.66 0.727302
Target:  5'- gGUgCGg--GCGGCgcgCGCAgugcggcggcccgacCGCGGCGCc -3'
miRNA:   3'- -CAgGCagaCGUCGa--GCGU---------------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 67852 0.66 0.703907
Target:  5'- cUCCGggccgaGCuGCUCGCggcaacucccGgGCGGCGCg -3'
miRNA:   3'- cAGGCaga---CGuCGAGCG----------UgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 67953 0.66 0.703907
Target:  5'- -cCCGcUCgcGCGGC-CGC-CGCGGCGa -3'
miRNA:   3'- caGGC-AGa-CGUCGaGCGuGCGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.