miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 137933 0.66 0.68415
Target:  5'- -cCCGgCUGCGGCg-GCGgcUGCGGCGg -3'
miRNA:   3'- caGGCaGACGUCGagCGU--GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 137055 0.66 0.723431
Target:  5'- -aCCGUCgGCAggcgcggaggcGCggGCACccaugGCGGCGCa -3'
miRNA:   3'- caGGCAGaCGU-----------CGagCGUG-----CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 136755 0.66 0.71077
Target:  5'- -gCCGUCggugGUgaggAGCUCGUGCagcgagucggcgagGCGGUGCa -3'
miRNA:   3'- caGGCAGa---CG----UCGAGCGUG--------------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 135423 0.69 0.515668
Target:  5'- uGUUCGaggUGC-GCUCGCACGCcgcccaggcGGCGCg -3'
miRNA:   3'- -CAGGCag-ACGuCGAGCGUGCG---------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 135181 0.79 0.134042
Target:  5'- -cUCG-CUGCGGCUCGCGCggagcauggccgagGCGGCGCa -3'
miRNA:   3'- caGGCaGACGUCGAGCGUG--------------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 135007 0.67 0.624147
Target:  5'- -cCUGgc-GCGGCgggccCGCACGCGGcCGCg -3'
miRNA:   3'- caGGCagaCGUCGa----GCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 134196 0.67 0.624147
Target:  5'- -cCUGgc-GCGGCUCgGCGCGCGGguCGCg -3'
miRNA:   3'- caGGCagaCGUCGAG-CGUGCGCC--GCG- -5'
23596 5' -60.2 NC_005261.1 + 133929 0.66 0.68415
Target:  5'- cGUCgCGUUcgUGUAcCUgCGCcagGCGCGGCGCa -3'
miRNA:   3'- -CAG-GCAG--ACGUcGA-GCG---UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 133884 0.69 0.544691
Target:  5'- -gUgGUCUGC-GCaaGCcCGCGGCGCg -3'
miRNA:   3'- caGgCAGACGuCGagCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 133320 0.72 0.366223
Target:  5'- -gCUGcUCgcGCAGCUccugccggcacgCGCGCGCGGCGCu -3'
miRNA:   3'- caGGC-AGa-CGUCGA------------GCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 133162 0.66 0.723431
Target:  5'- -gCCGUCgGCGucGC-CGCcgacaacCGCGGCGCc -3'
miRNA:   3'- caGGCAGaCGU--CGaGCGu------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 132359 0.74 0.280207
Target:  5'- uUCCGcCgcgGCGcGCUCGCcgcgcuCGCGGCGCu -3'
miRNA:   3'- cAGGCaGa--CGU-CGAGCGu-----GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 131667 0.78 0.149407
Target:  5'- -aCCGUCUGCGagggugcgaccGCccUGCGCGCGGCGCu -3'
miRNA:   3'- caGGCAGACGU-----------CGa-GCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 131179 0.74 0.267536
Target:  5'- -gCCG-CaGCGGCUaCGCcCGCGGCGCg -3'
miRNA:   3'- caGGCaGaCGUCGA-GCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 130609 0.68 0.604112
Target:  5'- -cCCGUCuuUGCcuGCgccuucaacagCGCGCGgGGCGCg -3'
miRNA:   3'- caGGCAG--ACGu-CGa----------GCGUGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 130247 0.71 0.432902
Target:  5'- -gCCG-CgccaGCGGCUCGUACuGCGGgGCg -3'
miRNA:   3'- caGGCaGa---CGUCGAGCGUG-CGCCgCG- -5'
23596 5' -60.2 NC_005261.1 + 129725 0.66 0.694054
Target:  5'- -gCCGgCUGCAGCg-GCAgGgCGGCGg -3'
miRNA:   3'- caGGCaGACGUCGagCGUgC-GCCGCg -5'
23596 5' -60.2 NC_005261.1 + 129175 0.66 0.68415
Target:  5'- -aCCGcucguugCUGCcGCaggccaGCGCGUGGCGCa -3'
miRNA:   3'- caGGCa------GACGuCGag----CGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 128819 0.66 0.68415
Target:  5'- cUCgCG-CUGCGGCUgaCGCucGCGCGGCu- -3'
miRNA:   3'- cAG-GCaGACGUCGA--GCG--UGCGCCGcg -5'
23596 5' -60.2 NC_005261.1 + 128493 0.71 0.432902
Target:  5'- -cUCGUCgUGgAGCUCG-ACGCGGCGg -3'
miRNA:   3'- caGGCAG-ACgUCGAGCgUGCGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.