miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 127897 0.67 0.658229
Target:  5'- -cCCGUCggGCccgggccugggcuugGGCUCGgGCccgcucgauGCGGCGCa -3'
miRNA:   3'- caGGCAGa-CG---------------UCGAGCgUG---------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 127837 0.67 0.654225
Target:  5'- -gCCG-CgaGCAGCggacggggCGguCGCGGCGCc -3'
miRNA:   3'- caGGCaGa-CGUCGa-------GCguGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 126790 0.66 0.68415
Target:  5'- cGUCugCGUCUGCcGagaGCAgCGCGGCGUc -3'
miRNA:   3'- -CAG--GCAGACGuCgagCGU-GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 126559 0.7 0.441724
Target:  5'- -gCCGUCgcgcgcaaaugcUGCAGCa-GCGCGCGGCa- -3'
miRNA:   3'- caGGCAG------------ACGUCGagCGUGCGCCGcg -5'
23596 5' -60.2 NC_005261.1 + 125407 0.67 0.644206
Target:  5'- uUCCGga-GCGGC--GCGgGCGGCGCu -3'
miRNA:   3'- cAGGCagaCGUCGagCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 124243 0.68 0.594121
Target:  5'- -gCCGcCgcggGCAGg-CGcCGCGCGGCGCc -3'
miRNA:   3'- caGGCaGa---CGUCgaGC-GUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 124075 0.69 0.515668
Target:  5'- -gCCGaCUGCAGCccggCGCcCGCGuaGCGCg -3'
miRNA:   3'- caGGCaGACGUCGa---GCGuGCGC--CGCG- -5'
23596 5' -60.2 NC_005261.1 + 123835 0.68 0.584156
Target:  5'- --gCGUCgUGCAGCgUCGCGCugccuaGCGGCaGCc -3'
miRNA:   3'- cagGCAG-ACGUCG-AGCGUG------CGCCG-CG- -5'
23596 5' -60.2 NC_005261.1 + 121832 0.68 0.554486
Target:  5'- -gCCG-CcGCGGCggCGCAC-CGGCGCc -3'
miRNA:   3'- caGGCaGaCGUCGa-GCGUGcGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 121052 0.68 0.554486
Target:  5'- cGUCgCGgUUGUGGCgcgcggUGUGCGCGGCGCc -3'
miRNA:   3'- -CAG-GCaGACGUCGa-----GCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 120644 0.66 0.68415
Target:  5'- -cCUGUgcCUGCGGCgcaagGCGCG-GGCGCg -3'
miRNA:   3'- caGGCA--GACGUCGag---CGUGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 120597 0.66 0.674206
Target:  5'- -gCCGUCgccUGCGGCcucggCGC-CGUGGgGCu -3'
miRNA:   3'- caGGCAG---ACGUCGa----GCGuGCGCCgCG- -5'
23596 5' -60.2 NC_005261.1 + 120409 0.67 0.643203
Target:  5'- --gCGUCUGCgcugagcggccugGGCUgGUgaacauGCGCGGCGUg -3'
miRNA:   3'- cagGCAGACG-------------UCGAgCG------UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 118940 0.72 0.343109
Target:  5'- -gCCG-C-GCGGCUgGC-CGCGGCGCa -3'
miRNA:   3'- caGGCaGaCGUCGAgCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 118840 0.72 0.3584
Target:  5'- -gCCGcUCUGCGGCgCGgaGgGCGGCGCg -3'
miRNA:   3'- caGGC-AGACGUCGaGCg-UgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 118778 0.67 0.664228
Target:  5'- -gCCGacgCUGCAGacgGCGCGCugauGGCGCa -3'
miRNA:   3'- caGGCa--GACGUCgagCGUGCG----CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 118368 0.66 0.709792
Target:  5'- -gCCGggcgCUGgGGCgcgcggcccgaggCGCugGCGGcCGCg -3'
miRNA:   3'- caGGCa---GACgUCGa------------GCGugCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 118251 0.73 0.328294
Target:  5'- -gCCGUCUGCGGCgugccggUGCACuGC-GCGCa -3'
miRNA:   3'- caGGCAGACGUCGa------GCGUG-CGcCGCG- -5'
23596 5' -60.2 NC_005261.1 + 118200 0.66 0.723431
Target:  5'- -cCCGcgcCUGCcGCgcuGCGCGgGGCGCu -3'
miRNA:   3'- caGGCa--GACGuCGag-CGUGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 117933 0.71 0.424183
Target:  5'- -gCCGgCUGCGGCccgUGCGCGCucgcugcuacgGGCGCg -3'
miRNA:   3'- caGGCaGACGUCGa--GCGUGCG-----------CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.