miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 117726 0.7 0.477992
Target:  5'- -cCCGcaaGCGGC-CGCGCGCuGGCGCc -3'
miRNA:   3'- caGGCagaCGUCGaGCGUGCG-CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 116140 0.69 0.533013
Target:  5'- aUCCG-CaGCAGCgagaggaagcaGCGCGCGGuCGCg -3'
miRNA:   3'- cAGGCaGaCGUCGag---------CGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 115908 0.67 0.615125
Target:  5'- -gCCGUC-GuCAGCgccggccgccgcgucCGCGCGCGGgGCa -3'
miRNA:   3'- caGGCAGaC-GUCGa--------------GCGUGCGCCgCG- -5'
23596 5' -60.2 NC_005261.1 + 115768 0.69 0.544691
Target:  5'- -cCCGUCUcgGCGGCgucgaCGUACGCGuaGCc -3'
miRNA:   3'- caGGCAGA--CGUCGa----GCGUGCGCcgCG- -5'
23596 5' -60.2 NC_005261.1 + 115560 0.69 0.50613
Target:  5'- gGUCCGUgUGgCAGCacaCGaACGCGGCGa -3'
miRNA:   3'- -CAGGCAgAC-GUCGa--GCgUGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 115476 0.7 0.450647
Target:  5'- uGUCgGUC-GCGGgCUCGgcCGCgGCGGCGCg -3'
miRNA:   3'- -CAGgCAGaCGUC-GAGC--GUG-CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 114324 0.66 0.674206
Target:  5'- aGUCCGgc-GCaagguggacuGGCUCGa--GCGGCGCg -3'
miRNA:   3'- -CAGGCagaCG----------UCGAGCgugCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 113876 0.67 0.664228
Target:  5'- cUCCGggugccacCUGUAGCg-GCgACGCGGCGg -3'
miRNA:   3'- cAGGCa-------GACGUCGagCG-UGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 112159 0.66 0.723431
Target:  5'- -gCCGaUCaUGCucuucgccGGC-CGCGCGCGGgGCu -3'
miRNA:   3'- caGGC-AG-ACG--------UCGaGCGUGCGCCgCG- -5'
23596 5' -60.2 NC_005261.1 + 111751 0.67 0.614123
Target:  5'- aGUgCGg--GCAGCUCGUgcaccuGCGCuGCGCg -3'
miRNA:   3'- -CAgGCagaCGUCGAGCG------UGCGcCGCG- -5'
23596 5' -60.2 NC_005261.1 + 110888 0.66 0.723431
Target:  5'- -cCCGUCUcGCGGCUgggcgacugCGaCGCGaCGGUGUu -3'
miRNA:   3'- caGGCAGA-CGUCGA---------GC-GUGC-GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 110619 0.66 0.68415
Target:  5'- -gCCGagCUGCGGCUggaGCcCGCcGGCGUa -3'
miRNA:   3'- caGGCa-GACGUCGAg--CGuGCG-CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 110523 0.72 0.350696
Target:  5'- -gUCGUCUGCGGggCGCAgGagGGCGCg -3'
miRNA:   3'- caGGCAGACGUCgaGCGUgCg-CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 109850 0.67 0.654225
Target:  5'- -gCCGUUggugGCGGCUC-CugGgGGCaGCg -3'
miRNA:   3'- caGGCAGa---CGUCGAGcGugCgCCG-CG- -5'
23596 5' -60.2 NC_005261.1 + 109360 0.66 0.68415
Target:  5'- -gCCGUCcaGCcGCUCGaGCGCGGCcCa -3'
miRNA:   3'- caGGCAGa-CGuCGAGCgUGCGCCGcG- -5'
23596 5' -60.2 NC_005261.1 + 109180 0.68 0.564333
Target:  5'- cUCCG-CUaGCAGCgccgcgucgggCGUGCGCaGGCGCu -3'
miRNA:   3'- cAGGCaGA-CGUCGa----------GCGUGCG-CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 108286 0.68 0.574225
Target:  5'- gGUCCGgcgUUGC-GCUCGCcuGCaCGGCGUc -3'
miRNA:   3'- -CAGGCa--GACGuCGAGCG--UGcGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 108156 0.73 0.332688
Target:  5'- -aCCGcCUGCAGCgcguccgccaggGCGCGCGGcCGCg -3'
miRNA:   3'- caGGCaGACGUCGag----------CGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 108005 0.67 0.634178
Target:  5'- -gCCGUCggGCAGCcccaGCA-GCGGCaGCa -3'
miRNA:   3'- caGGCAGa-CGUCGag--CGUgCGCCG-CG- -5'
23596 5' -60.2 NC_005261.1 + 107175 0.74 0.282797
Target:  5'- cUCCGUCucggcggcguagcccUGCAGC-CGCGCgaagGCGGCGUg -3'
miRNA:   3'- cAGGCAG---------------ACGUCGaGCGUG----CGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.