miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 106968 0.7 0.487288
Target:  5'- cUCCGcCU-CGGCgCGCGCGCcGCGCa -3'
miRNA:   3'- cAGGCaGAcGUCGaGCGUGCGcCGCG- -5'
23596 5' -60.2 NC_005261.1 + 106874 0.72 0.343109
Target:  5'- cGUCCGcggccucgcacucCUGCAGCgccugcgucguccgCGC-CGCGGCGCg -3'
miRNA:   3'- -CAGGCa------------GACGUCGa-------------GCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 106792 0.67 0.624147
Target:  5'- -gCCGUCUGC-GCcCGCAC-CaGCGCc -3'
miRNA:   3'- caGGCAGACGuCGaGCGUGcGcCGCG- -5'
23596 5' -60.2 NC_005261.1 + 106557 0.67 0.628159
Target:  5'- cGUCCGggccgGCgcgcgccggccccggGGC-CGcCGCGCGGCGCu -3'
miRNA:   3'- -CAGGCaga--CG---------------UCGaGC-GUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 106393 0.68 0.564333
Target:  5'- -gCCG-CUGuCGGCgacaUC-CGCGCGGCGCu -3'
miRNA:   3'- caGGCaGAC-GUCG----AGcGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 106168 0.67 0.624147
Target:  5'- cUCCGcgCUaauacuagGgGGCgccgCGCGCGUGGCGCc -3'
miRNA:   3'- cAGGCa-GA--------CgUCGa---GCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 106106 0.66 0.68415
Target:  5'- --aCGUCgGcCGGCgUCGCcgGCGCGcGCGCg -3'
miRNA:   3'- cagGCAGaC-GUCG-AGCG--UGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 105904 0.69 0.525277
Target:  5'- cUCCGggcgCggGCcGCUCGCGCGCGcccacgccGCGCc -3'
miRNA:   3'- cAGGCa---Ga-CGuCGAGCGUGCGC--------CGCG- -5'
23596 5' -60.2 NC_005261.1 + 105366 0.68 0.604112
Target:  5'- -gCCGUgacagGCGGCgCGCGCGgGuGCGCg -3'
miRNA:   3'- caGGCAga---CGUCGaGCGUGCgC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 105151 0.69 0.525277
Target:  5'- gGUCC-UC-GCGGCUCGaGgGCGGCGUc -3'
miRNA:   3'- -CAGGcAGaCGUCGAGCgUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 105105 0.68 0.554486
Target:  5'- uUCCG-CgGgGGCUUGCccGCGCGGgCGCg -3'
miRNA:   3'- cAGGCaGaCgUCGAGCG--UGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 104492 0.68 0.594121
Target:  5'- cGUCCacggcGUCgUGCAGC-CGCucCGUGGCGg -3'
miRNA:   3'- -CAGG-----CAG-ACGUCGaGCGu-GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 104233 0.66 0.713702
Target:  5'- -aCCGUgccCUcCAGCgccagaauuUCGCGCGCGaGCGCc -3'
miRNA:   3'- caGGCA---GAcGUCG---------AGCGUGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 104206 0.81 0.091893
Target:  5'- --gCGUCcagGC-GCUCGCGCGCGGCGCg -3'
miRNA:   3'- cagGCAGa--CGuCGAGCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 103937 0.72 0.382217
Target:  5'- cGUCUGccagacgCUGCAGCggCGCGacCGCGGCGg -3'
miRNA:   3'- -CAGGCa------GACGUCGa-GCGU--GCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 103753 0.68 0.604112
Target:  5'- cUCCGcCUGCGcCUCGUGCaGCaGCGCc -3'
miRNA:   3'- cAGGCaGACGUcGAGCGUG-CGcCGCG- -5'
23596 5' -60.2 NC_005261.1 + 103417 0.68 0.554486
Target:  5'- cUCCGcgCgggccGCGGCcaCGCGCGCGcGCGCc -3'
miRNA:   3'- cAGGCa-Ga----CGUCGa-GCGUGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 103179 0.66 0.68415
Target:  5'- -gCCGgucCUGCAcgcccGCggucaCGCGCgGCGGCGCc -3'
miRNA:   3'- caGGCa--GACGU-----CGa----GCGUG-CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 102947 0.66 0.68415
Target:  5'- -gCCG-CUGCGGCggcgGC-CGCgGGCGCc -3'
miRNA:   3'- caGGCaGACGUCGag--CGuGCG-CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 102643 0.73 0.300099
Target:  5'- cUUCGUCcGCGGCcCGCAgcaccuccucCGCGGCGCc -3'
miRNA:   3'- cAGGCAGaCGUCGaGCGU----------GCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.