miRNA display CGI


Results 81 - 100 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 102354 0.66 0.71077
Target:  5'- --gCGUCgaagGCGGagcgCGCcucaacgcgcuccaGCGCGGCGCg -3'
miRNA:   3'- cagGCAGa---CGUCga--GCG--------------UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 101862 0.75 0.243589
Target:  5'- -gCCGcCUGCAGCacgucCGCGCGCagGGCGCc -3'
miRNA:   3'- caGGCaGACGUCGa----GCGUGCG--CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 101132 0.69 0.544691
Target:  5'- gGUCC-UCgcgcgagGCuGC-CGCGCgGCGGCGCg -3'
miRNA:   3'- -CAGGcAGa------CGuCGaGCGUG-CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 101092 0.76 0.196213
Target:  5'- -gCCGcCUGCAGCgcggccgCGCGCGCcuuGGCGCc -3'
miRNA:   3'- caGGCaGACGUCGa------GCGUGCG---CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 100716 0.68 0.604112
Target:  5'- -cCCGagCcGCGGCcgcgcCGCGCGCGcGCGCg -3'
miRNA:   3'- caGGCa-GaCGUCGa----GCGUGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 100668 0.69 0.515668
Target:  5'- --gCGUCgcGgGGUUCGCGCGCGaGUGCa -3'
miRNA:   3'- cagGCAGa-CgUCGAGCGUGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 100507 0.66 0.694054
Target:  5'- -gCCGUCggcguccagGUAGC---CGCGCGGCGCc -3'
miRNA:   3'- caGGCAGa--------CGUCGagcGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 100250 0.68 0.604112
Target:  5'- --aCGUCUGcCAGCccccagucggCGCGCcgGUGGCGCa -3'
miRNA:   3'- cagGCAGAC-GUCGa---------GCGUG--CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 100102 0.67 0.654225
Target:  5'- -gCCG-CUGCcGC-CGCccaGCGGCGCc -3'
miRNA:   3'- caGGCaGACGuCGaGCGug-CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 99534 0.66 0.694054
Target:  5'- -aCCGUCgaggGC-GCgUC-CAgGCGGCGCg -3'
miRNA:   3'- caGGCAGa---CGuCG-AGcGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 99387 0.77 0.177866
Target:  5'- -aCCGUCUGCAcCUCGCugGgCGGCuGCc -3'
miRNA:   3'- caGGCAGACGUcGAGCGugC-GCCG-CG- -5'
23596 5' -60.2 NC_005261.1 + 99214 0.67 0.634178
Target:  5'- gGUCCGaggacaCcGCGGCagGCGCGuCGGCGUc -3'
miRNA:   3'- -CAGGCa-----GaCGUCGagCGUGC-GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 99010 0.7 0.477992
Target:  5'- --gCGUCgcgaGCGGCggCGCG-GCGGCGCg -3'
miRNA:   3'- cagGCAGa---CGUCGa-GCGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 98574 0.67 0.654225
Target:  5'- -gCCGUCcuccGCgGGCUCGgGCgaguagGCGGCGCc -3'
miRNA:   3'- caGGCAGa---CG-UCGAGCgUG------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 98253 0.7 0.450647
Target:  5'- -cCCGg-UGCGGCgCGuCAgGCGGCGCg -3'
miRNA:   3'- caGGCagACGUCGaGC-GUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 98146 0.72 0.382217
Target:  5'- -gCCGUCgGCGGCaaggcCGCGgGCGGCGg -3'
miRNA:   3'- caGGCAGaCGUCGa----GCGUgCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 96600 0.76 0.201052
Target:  5'- cUCUG-CcGCAGCacgUCGCGCGUGGCGCg -3'
miRNA:   3'- cAGGCaGaCGUCG---AGCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 95811 0.71 0.390387
Target:  5'- -gCCGgcgGgGGCUCGCGguccuCGCGGCGCu -3'
miRNA:   3'- caGGCagaCgUCGAGCGU-----GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 95630 0.67 0.644206
Target:  5'- gGUCCaggaGCGGCUgggcgagcgCGaCGCGCGGCGCc -3'
miRNA:   3'- -CAGGcagaCGUCGA---------GC-GUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 93881 0.66 0.713702
Target:  5'- uUCCaGcUCaGCAGCgcggUCGCcagcgacugcggGCGCGGCGCc -3'
miRNA:   3'- cAGG-C-AGaCGUCG----AGCG------------UGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.