miRNA display CGI


Results 101 - 120 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 93826 0.67 0.644206
Target:  5'- -aCCG-CcGCAGC-CGcCGgGCGGCGCc -3'
miRNA:   3'- caGGCaGaCGUCGaGC-GUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 93748 0.73 0.321066
Target:  5'- cUUCGUacucgGCGGCccgcgCGCGCGCGGCGUc -3'
miRNA:   3'- cAGGCAga---CGUCGa----GCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 93670 0.7 0.441724
Target:  5'- gGUCCG-CggGCGGCggCGCcgGCGgGGCGCc -3'
miRNA:   3'- -CAGGCaGa-CGUCGa-GCG--UGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 93486 0.68 0.554486
Target:  5'- --gCGUCgcccGCGGCgaagCGCGCgaaccGCGGCGCc -3'
miRNA:   3'- cagGCAGa---CGUCGa---GCGUG-----CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 93340 0.71 0.432902
Target:  5'- cGUCCGcgcGCAGCgCGCGCaGCGcGCGCc -3'
miRNA:   3'- -CAGGCagaCGUCGaGCGUG-CGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 93148 1.11 0.000752
Target:  5'- gGUCCGUCUGCAGCUCGCACGCGGCGCa -3'
miRNA:   3'- -CAGGCAGACGUCGAGCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 92598 0.66 0.674206
Target:  5'- -------cGCAGC-CGCuCGCGGCGCg -3'
miRNA:   3'- caggcagaCGUCGaGCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 91710 0.72 0.343109
Target:  5'- -gCCGgCUGCaaggccGGCUCGC-CGCGGCGg -3'
miRNA:   3'- caGGCaGACG------UCGAGCGuGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 91169 0.67 0.634178
Target:  5'- -cCCGggcgGCAGCucccgccgggcuUCGCGCGCuucGGCGCc -3'
miRNA:   3'- caGGCaga-CGUCG------------AGCGUGCG---CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 90875 0.67 0.634178
Target:  5'- -gCCGUCUGCgcgcugggcgacGGCaUgGCGCggcaggucucgGCGGCGCu -3'
miRNA:   3'- caGGCAGACG------------UCG-AgCGUG-----------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 90783 0.68 0.564333
Target:  5'- -gCCG-CUGCGGCggccggCGCGCGCuaccGCGUg -3'
miRNA:   3'- caGGCaGACGUCGa-----GCGUGCGc---CGCG- -5'
23596 5' -60.2 NC_005261.1 + 90392 0.66 0.674206
Target:  5'- -cCCGcCgGCggGGCUgGCGCcCGGCGCg -3'
miRNA:   3'- caGGCaGaCG--UCGAgCGUGcGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 89087 0.74 0.280207
Target:  5'- -aCCGgCUGCGGCccgggcgCGCugGCGcGCGCg -3'
miRNA:   3'- caGGCaGACGUCGa------GCGugCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 87485 0.68 0.594121
Target:  5'- gGUUCGgcgCgGCcguGCUgGCGCGCaGGCGCu -3'
miRNA:   3'- -CAGGCa--GaCGu--CGAgCGUGCG-CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 87093 0.71 0.41557
Target:  5'- -gCCGUgCaGCAGCgCGCagaGCGCGGCGUu -3'
miRNA:   3'- caGGCA-GaCGUCGaGCG---UGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 86928 0.67 0.614123
Target:  5'- -aCCG-CcGCcGC-CGCGCGCGGCGg -3'
miRNA:   3'- caGGCaGaCGuCGaGCGUGCGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 86890 0.68 0.604112
Target:  5'- -gCCG-C-GCccuGGUcCGCGCGCGGCGCg -3'
miRNA:   3'- caGGCaGaCG---UCGaGCGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 85553 0.77 0.191477
Target:  5'- cUCCGUCUGCGGCgcCGCGagguuCGGCGCc -3'
miRNA:   3'- cAGGCAGACGUCGa-GCGUgc---GCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 84329 0.66 0.694054
Target:  5'- cGUCCGgg-GCcGCgcucgCGCACGCgccaaagucgaaGGCGCc -3'
miRNA:   3'- -CAGGCagaCGuCGa----GCGUGCG------------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 83650 0.68 0.604112
Target:  5'- --aCGUCaGCGGCgugaggcggaCGCGCGCcugGGCGCg -3'
miRNA:   3'- cagGCAGaCGUCGa---------GCGUGCG---CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.