Results 81 - 100 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23596 | 5' | -60.2 | NC_005261.1 | + | 73724 | 0.66 | 0.694054 |
Target: 5'- gGUCgGcgUGCGcGCUUGCGCGCGGgGg -3' miRNA: 3'- -CAGgCagACGU-CGAGCGUGCGCCgCg -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 54486 | 0.66 | 0.694054 |
Target: 5'- --gCGUCggGCGGCaggCGCaaACGCaGGCGCc -3' miRNA: 3'- cagGCAGa-CGUCGa--GCG--UGCG-CCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 1409 | 0.66 | 0.694054 |
Target: 5'- -gCCG-CgGCGGCggCGgGgGCGGCGCc -3' miRNA: 3'- caGGCaGaCGUCGa-GCgUgCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 30966 | 0.66 | 0.68415 |
Target: 5'- -cCCGcCgcgaCGGCcCGC-CGCGGCGCa -3' miRNA: 3'- caGGCaGac--GUCGaGCGuGCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 137933 | 0.66 | 0.68415 |
Target: 5'- -cCCGgCUGCGGCg-GCGgcUGCGGCGg -3' miRNA: 3'- caGGCaGACGUCGagCGU--GCGCCGCg -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 133929 | 0.66 | 0.68415 |
Target: 5'- cGUCgCGUUcgUGUAcCUgCGCcagGCGCGGCGCa -3' miRNA: 3'- -CAG-GCAG--ACGUcGA-GCG---UGCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 103179 | 0.66 | 0.68415 |
Target: 5'- -gCCGgucCUGCAcgcccGCggucaCGCGCgGCGGCGCc -3' miRNA: 3'- caGGCa--GACGU-----CGa----GCGUG-CGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 12291 | 0.66 | 0.694054 |
Target: 5'- aGUCCGcgUCcGCcGCggGCACG-GGCGCg -3' miRNA: 3'- -CAGGC--AGaCGuCGagCGUGCgCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 53050 | 0.66 | 0.694054 |
Target: 5'- -gCCGUCgggaggGCAguGCUC-CACcccgggGCGGCGCa -3' miRNA: 3'- caGGCAGa-----CGU--CGAGcGUG------CGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 56083 | 0.66 | 0.694054 |
Target: 5'- aGUCCG-CUcgcuacuuccaGCGGCUCcuGCGCgaGCGGCGg -3' miRNA: 3'- -CAGGCaGA-----------CGUCGAG--CGUG--CGCCGCg -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 49251 | 0.66 | 0.703907 |
Target: 5'- -gCCGcCgcgGCGGCgucggcgCGCACGUccgcgaggaaGGCGCa -3' miRNA: 3'- caGGCaGa--CGUCGa------GCGUGCG----------CCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 48801 | 0.66 | 0.703907 |
Target: 5'- cUCCGUga--GGC-CGUGCGCGGCGUc -3' miRNA: 3'- cAGGCAgacgUCGaGCGUGCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 29228 | 0.66 | 0.703907 |
Target: 5'- -cCCG-C-GCAGgCUaCGC-CGCGGCGCc -3' miRNA: 3'- caGGCaGaCGUC-GA-GCGuGCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 1908 | 0.66 | 0.703907 |
Target: 5'- -gCCG-CUcaGGC-CaGCGCGCGGCGCa -3' miRNA: 3'- caGGCaGAcgUCGaG-CGUGCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 50991 | 0.66 | 0.703907 |
Target: 5'- -gCCGaCgGCGGCgCGUggGCGCGGCGg -3' miRNA: 3'- caGGCaGaCGUCGaGCG--UGCGCCGCg -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 40652 | 0.66 | 0.703907 |
Target: 5'- cGUCCagcGUCgacaGCAGCUcCGCgACGCcgucggggagccGGCGCc -3' miRNA: 3'- -CAGG---CAGa---CGUCGA-GCG-UGCG------------CCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 81164 | 0.66 | 0.698001 |
Target: 5'- cUCCGUguagUUGCgcccgAGCUCGUacucggggcacggccGCGCGGgCGCg -3' miRNA: 3'- cAGGCA----GACG-----UCGAGCG---------------UGCGCC-GCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 99534 | 0.66 | 0.694054 |
Target: 5'- -aCCGUCgaggGC-GCgUC-CAgGCGGCGCg -3' miRNA: 3'- caGGCAGa---CGuCG-AGcGUgCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 11036 | 0.66 | 0.694054 |
Target: 5'- -cCCGUCccccgGCGGCacUCGgGCGCcgcccaGGCGCc -3' miRNA: 3'- caGGCAGa----CGUCG--AGCgUGCG------CCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 84329 | 0.66 | 0.694054 |
Target: 5'- cGUCCGgg-GCcGCgcucgCGCACGCgccaaagucgaaGGCGCc -3' miRNA: 3'- -CAGGCagaCGuCGa----GCGUGCG------------CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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