miRNA display CGI


Results 101 - 120 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23596 5' -60.2 NC_005261.1 + 109360 0.66 0.68415
Target:  5'- -gCCGUCcaGCcGCUCGaGCGCGGCcCa -3'
miRNA:   3'- caGGCAGa-CGuCGAGCgUGCGCCGcG- -5'
23596 5' -60.2 NC_005261.1 + 106106 0.66 0.68415
Target:  5'- --aCGUCgGcCGGCgUCGCcgGCGCGcGCGCg -3'
miRNA:   3'- cagGCAGaC-GUCG-AGCG--UGCGC-CGCG- -5'
23596 5' -60.2 NC_005261.1 + 70860 0.66 0.68415
Target:  5'- gGUCCagg-GCGGC-CGC-CGUGGCGUg -3'
miRNA:   3'- -CAGGcagaCGUCGaGCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 59043 0.66 0.68415
Target:  5'- -gCCGcCgcGCgAGCUcagCGCGCGCGGcCGCg -3'
miRNA:   3'- caGGCaGa-CG-UCGA---GCGUGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 53854 0.66 0.68415
Target:  5'- uUCCGgcaaGC-GCUCcaGCGCGGCGCg -3'
miRNA:   3'- cAGGCaga-CGuCGAGcgUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 30966 0.66 0.68415
Target:  5'- -cCCGcCgcgaCGGCcCGC-CGCGGCGCa -3'
miRNA:   3'- caGGCaGac--GUCGaGCGuGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 1409 0.66 0.694054
Target:  5'- -gCCG-CgGCGGCggCGgGgGCGGCGCc -3'
miRNA:   3'- caGGCaGaCGUCGa-GCgUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 40652 0.66 0.703907
Target:  5'- cGUCCagcGUCgacaGCAGCUcCGCgACGCcgucggggagccGGCGCc -3'
miRNA:   3'- -CAGG---CAGa---CGUCGA-GCG-UGCG------------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 81164 0.66 0.698001
Target:  5'- cUCCGUguagUUGCgcccgAGCUCGUacucggggcacggccGCGCGGgCGCg -3'
miRNA:   3'- cAGGCA----GACG-----UCGAGCG---------------UGCGCC-GCG- -5'
23596 5' -60.2 NC_005261.1 + 99534 0.66 0.694054
Target:  5'- -aCCGUCgaggGC-GCgUC-CAgGCGGCGCg -3'
miRNA:   3'- caGGCAGa---CGuCG-AGcGUgCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 11036 0.66 0.694054
Target:  5'- -cCCGUCccccgGCGGCacUCGgGCGCcgcccaGGCGCc -3'
miRNA:   3'- caGGCAGa----CGUCG--AGCgUGCG------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 84329 0.66 0.694054
Target:  5'- cGUCCGgg-GCcGCgcucgCGCACGCgccaaagucgaaGGCGCc -3'
miRNA:   3'- -CAGGCagaCGuCGa----GCGUGCG------------CCGCG- -5'
23596 5' -60.2 NC_005261.1 + 56083 0.66 0.694054
Target:  5'- aGUCCG-CUcgcuacuuccaGCGGCUCcuGCGCgaGCGGCGg -3'
miRNA:   3'- -CAGGCaGA-----------CGUCGAG--CGUG--CGCCGCg -5'
23596 5' -60.2 NC_005261.1 + 53050 0.66 0.694054
Target:  5'- -gCCGUCgggaggGCAguGCUC-CACcccgggGCGGCGCa -3'
miRNA:   3'- caGGCAGa-----CGU--CGAGcGUG------CGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 12291 0.66 0.694054
Target:  5'- aGUCCGcgUCcGCcGCggGCACG-GGCGCg -3'
miRNA:   3'- -CAGGC--AGaCGuCGagCGUGCgCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 129725 0.66 0.694054
Target:  5'- -gCCGgCUGCAGCg-GCAgGgCGGCGg -3'
miRNA:   3'- caGGCaGACGUCGagCGUgC-GCCGCg -5'
23596 5' -60.2 NC_005261.1 + 100507 0.66 0.694054
Target:  5'- -gCCGUCggcguccagGUAGC---CGCGCGGCGCc -3'
miRNA:   3'- caGGCAGa--------CGUCGagcGUGCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 83592 0.66 0.694054
Target:  5'- -gCCGcCaGCAGCgcgUCGCucuccgcCGCGGCGUg -3'
miRNA:   3'- caGGCaGaCGUCG---AGCGu------GCGCCGCG- -5'
23596 5' -60.2 NC_005261.1 + 73724 0.66 0.694054
Target:  5'- gGUCgGcgUGCGcGCUUGCGCGCGGgGg -3'
miRNA:   3'- -CAGgCagACGU-CGAGCGUGCGCCgCg -5'
23596 5' -60.2 NC_005261.1 + 54486 0.66 0.694054
Target:  5'- --gCGUCggGCGGCaggCGCaaACGCaGGCGCc -3'
miRNA:   3'- cagGCAGa-CGUCGa--GCG--UGCG-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.