Results 41 - 60 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23596 | 5' | -60.2 | NC_005261.1 | + | 118200 | 0.66 | 0.723431 |
Target: 5'- -cCCGcgcCUGCcGCgcuGCGCGgGGCGCu -3' miRNA: 3'- caGGCa--GACGuCGag-CGUGCgCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 133162 | 0.66 | 0.723431 |
Target: 5'- -gCCGUCgGCGucGC-CGCcgacaacCGCGGCGCc -3' miRNA: 3'- caGGCAGaCGU--CGaGCGu------GCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 137055 | 0.66 | 0.723431 |
Target: 5'- -aCCGUCgGCAggcgcggaggcGCggGCACccaugGCGGCGCa -3' miRNA: 3'- caGGCAGaCGU-----------CGagCGUG-----CGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 23309 | 0.66 | 0.723431 |
Target: 5'- -cCCGUaugGCcgagcagaaagaAGCcgacgaGCGCGCGGCGCa -3' miRNA: 3'- caGGCAga-CG------------UCGag----CGUGCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 67108 | 0.66 | 0.727302 |
Target: 5'- gGUgCGg--GCGGCgcgCGCAgugcggcggcccgacCGCGGCGCc -3' miRNA: 3'- -CAgGCagaCGUCGa--GCGU---------------GCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 93881 | 0.66 | 0.713702 |
Target: 5'- uUCCaGcUCaGCAGCgcggUCGCcagcgacugcggGCGCGGCGCc -3' miRNA: 3'- cAGG-C-AGaCGUCG----AGCG------------UGCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 81717 | 0.66 | 0.713702 |
Target: 5'- gGUCCGcgCgcaGCAGCg-GCACGCGucCGCa -3' miRNA: 3'- -CAGGCa-Ga--CGUCGagCGUGCGCc-GCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 29228 | 0.66 | 0.703907 |
Target: 5'- -cCCG-C-GCAGgCUaCGC-CGCGGCGCc -3' miRNA: 3'- caGGCaGaCGUC-GA-GCGuGCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 48801 | 0.66 | 0.703907 |
Target: 5'- cUCCGUga--GGC-CGUGCGCGGCGUc -3' miRNA: 3'- cAGGCAgacgUCGaGCGUGCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 49251 | 0.66 | 0.703907 |
Target: 5'- -gCCGcCgcgGCGGCgucggcgCGCACGUccgcgaggaaGGCGCa -3' miRNA: 3'- caGGCaGa--CGUCGa------GCGUGCG----------CCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 50850 | 0.66 | 0.703907 |
Target: 5'- --gCGcCUGUGGCUCGCccAgGuCGGCGCc -3' miRNA: 3'- cagGCaGACGUCGAGCG--UgC-GCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 67852 | 0.66 | 0.703907 |
Target: 5'- cUCCGggccgaGCuGCUCGCggcaacucccGgGCGGCGCg -3' miRNA: 3'- cAGGCaga---CGuCGAGCG----------UgCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 67953 | 0.66 | 0.703907 |
Target: 5'- -cCCGcUCgcGCGGC-CGC-CGCGGCGa -3' miRNA: 3'- caGGC-AGa-CGUCGaGCGuGCGCCGCg -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 40760 | 0.66 | 0.707833 |
Target: 5'- uGUCgGUCUGCAGUgccauggagaccaGCcCGCcGCGCa -3' miRNA: 3'- -CAGgCAGACGUCGag-----------CGuGCGcCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 118368 | 0.66 | 0.709792 |
Target: 5'- -gCCGggcgCUGgGGCgcgcggcccgaggCGCugGCGGcCGCg -3' miRNA: 3'- caGGCa---GACgUCGa------------GCGugCGCC-GCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 136755 | 0.66 | 0.71077 |
Target: 5'- -gCCGUCggugGUgaggAGCUCGUGCagcgagucggcgagGCGGUGCa -3' miRNA: 3'- caGGCAGa---CG----UCGAGCGUG--------------CGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 102354 | 0.66 | 0.71077 |
Target: 5'- --gCGUCgaagGCGGagcgCGCcucaacgcgcuccaGCGCGGCGCg -3' miRNA: 3'- cagGCAGa---CGUCga--GCG--------------UGCGCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 12788 | 0.66 | 0.713702 |
Target: 5'- -cUCGUCgGCgAGCUCGU-CGuCGGCGUc -3' miRNA: 3'- caGGCAGaCG-UCGAGCGuGC-GCCGCG- -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 64838 | 0.66 | 0.713702 |
Target: 5'- gGUCCGcgcgCUGCAGCgccaugaccgcgUCGCGucccagaucaGCGGCGg -3' miRNA: 3'- -CAGGCa---GACGUCG------------AGCGUg---------CGCCGCg -5' |
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23596 | 5' | -60.2 | NC_005261.1 | + | 71056 | 0.66 | 0.713702 |
Target: 5'- -gCCGUggGcCAGC-CGcCGCGCGGCGg -3' miRNA: 3'- caGGCAgaC-GUCGaGC-GUGCGCCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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