miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23597 3' -52.4 NC_005261.1 + 79791 0.66 0.982109
Target:  5'- aGUACGUCacGGccauGGCGUcccccaacauGCGCGcGGCGg -3'
miRNA:   3'- -CAUGCAGaaCUu---CCGCA----------UGCGC-UCGC- -5'
23597 3' -52.4 NC_005261.1 + 58095 0.66 0.982109
Target:  5'- -cGCGUCcuc-GGGCGgcaccagccGCGCGAGCa -3'
miRNA:   3'- caUGCAGaacuUCCGCa--------UGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 74920 0.66 0.980184
Target:  5'- -cGCGggg-GAGGGCGaggacggggacugcgGCGCGGGCGc -3'
miRNA:   3'- caUGCagaaCUUCCGCa--------------UGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 83647 0.66 0.979961
Target:  5'- cGUACGUCagcggcgUG-AGGCGgacGCGCGccugGGCGc -3'
miRNA:   3'- -CAUGCAGa------ACuUCCGCa--UGCGC----UCGC- -5'
23597 3' -52.4 NC_005261.1 + 15706 0.66 0.979961
Target:  5'- uUGCGUCggcugggUGGAcGGCGaACGCGA-CGg -3'
miRNA:   3'- cAUGCAGa------ACUU-CCGCaUGCGCUcGC- -5'
23597 3' -52.4 NC_005261.1 + 19476 0.66 0.977626
Target:  5'- --cCGUCUUGAcgucccgauGGGCGauccgGCGgGAGUGc -3'
miRNA:   3'- cauGCAGAACU---------UCCGCa----UGCgCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 74840 0.66 0.977626
Target:  5'- -cGCGgacCUggGGAGGCGgcGCGCcGGGCGg -3'
miRNA:   3'- caUGCa--GAa-CUUCCGCa-UGCG-CUCGC- -5'
23597 3' -52.4 NC_005261.1 + 43781 0.66 0.977626
Target:  5'- -gGCGgcgCgcgGAGGGCGc-CGCGGGUGa -3'
miRNA:   3'- caUGCa--Gaa-CUUCCGCauGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 71086 0.66 0.975097
Target:  5'- -gGCGUCcgggcccgaGAAGGCGUacacgGCGCGcAGCu -3'
miRNA:   3'- caUGCAGaa-------CUUCCGCA-----UGCGC-UCGc -5'
23597 3' -52.4 NC_005261.1 + 134893 0.66 0.975097
Target:  5'- uGUGCGUUcgguggUGGAGcGgGUGCGCaAGCGc -3'
miRNA:   3'- -CAUGCAGa-----ACUUC-CgCAUGCGcUCGC- -5'
23597 3' -52.4 NC_005261.1 + 107793 0.66 0.972365
Target:  5'- -cACGUUagGAGGGCcucGCGCGcGGCGg -3'
miRNA:   3'- caUGCAGaaCUUCCGca-UGCGC-UCGC- -5'
23597 3' -52.4 NC_005261.1 + 69745 0.66 0.972365
Target:  5'- -gGCGgaggaGGAGGCGaGCGCGGGgGg -3'
miRNA:   3'- caUGCagaa-CUUCCGCaUGCGCUCgC- -5'
23597 3' -52.4 NC_005261.1 + 98345 0.66 0.972365
Target:  5'- --gUGUCgacgcGggGGCGgggguggGCGCGGGCu -3'
miRNA:   3'- cauGCAGaa---CuuCCGCa------UGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 125800 0.66 0.969424
Target:  5'- -aACGgggCUUGGgccgGGGCcgcCGCGAGCGg -3'
miRNA:   3'- caUGCa--GAACU----UCCGcauGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 30203 0.66 0.969424
Target:  5'- -cGCG-CU-GGAGGCGgcCGCGcuGGCGg -3'
miRNA:   3'- caUGCaGAaCUUCCGCauGCGC--UCGC- -5'
23597 3' -52.4 NC_005261.1 + 72180 0.66 0.969118
Target:  5'- -gGCGUCcgagacgUUGgcGGCGgcCGCGcGCGg -3'
miRNA:   3'- caUGCAG-------AACuuCCGCauGCGCuCGC- -5'
23597 3' -52.4 NC_005261.1 + 99009 0.67 0.966266
Target:  5'- -aGCGUCgcGAGcGGCG-GCGCG-GCGg -3'
miRNA:   3'- caUGCAGaaCUU-CCGCaUGCGCuCGC- -5'
23597 3' -52.4 NC_005261.1 + 127736 0.67 0.966266
Target:  5'- -aGCGggagCUUGgcGGCGggaGCGGGCc -3'
miRNA:   3'- caUGCa---GAACuuCCGCaugCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 33808 0.67 0.966266
Target:  5'- -gGCGggCUUGucuuuGGGCGgccgggggGCGCGGGCc -3'
miRNA:   3'- caUGCa-GAACu----UCCGCa-------UGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 3438 0.67 0.966266
Target:  5'- -aGCGUCc---AGGCGggcGCGCGGGCc -3'
miRNA:   3'- caUGCAGaacuUCCGCa--UGCGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.