miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23597 3' -52.4 NC_005261.1 + 13670 0.67 0.959274
Target:  5'- -cGCGgg--GggGGCGcggggcGCGCGGGCGu -3'
miRNA:   3'- caUGCagaaCuuCCGCa-----UGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 48318 0.67 0.961468
Target:  5'- -cGCGUCgggcccgggcucGggGGCGcGCGCG-GCGa -3'
miRNA:   3'- caUGCAGaa----------CuuCCGCaUGCGCuCGC- -5'
23597 3' -52.4 NC_005261.1 + 53278 0.67 0.962534
Target:  5'- -cAUGUCgaUGGAGGCGccaagcgcccccgUGCGCGGGuCGa -3'
miRNA:   3'- caUGCAGa-ACUUCCGC-------------AUGCGCUC-GC- -5'
23597 3' -52.4 NC_005261.1 + 73591 0.67 0.962885
Target:  5'- -cGCGgc--GGAGGCGgcggcCGCGAGCGc -3'
miRNA:   3'- caUGCagaaCUUCCGCau---GCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 3438 0.67 0.966266
Target:  5'- -aGCGUCc---AGGCGggcGCGCGGGCc -3'
miRNA:   3'- caUGCAGaacuUCCGCa--UGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 33808 0.67 0.966266
Target:  5'- -gGCGggCUUGucuuuGGGCGgccgggggGCGCGGGCc -3'
miRNA:   3'- caUGCa-GAACu----UCCGCa-------UGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 127736 0.67 0.966266
Target:  5'- -aGCGggagCUUGgcGGCGggaGCGGGCc -3'
miRNA:   3'- caUGCa---GAACuuCCGCaugCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 99009 0.67 0.966266
Target:  5'- -aGCGUCgcGAGcGGCG-GCGCG-GCGg -3'
miRNA:   3'- caUGCAGaaCUU-CCGCaUGCGCuCGC- -5'
23597 3' -52.4 NC_005261.1 + 102743 0.68 0.927222
Target:  5'- -gGCGuUCUUcAGGGCGcuugccgcggACGCGAGCGc -3'
miRNA:   3'- caUGC-AGAAcUUCCGCa---------UGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 29340 0.68 0.932548
Target:  5'- cGUGCG-CUUc--GGCG-GCGCGGGCGa -3'
miRNA:   3'- -CAUGCaGAAcuuCCGCaUGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 39785 0.68 0.937621
Target:  5'- -gACGUCgccgGggGGCG-GCGCG-GCc -3'
miRNA:   3'- caUGCAGaa--CuuCCGCaUGCGCuCGc -5'
23597 3' -52.4 NC_005261.1 + 49417 0.68 0.937621
Target:  5'- gGUGCuuGUaCUUGAAGcGCGgaaacaGCGCGAGCc -3'
miRNA:   3'- -CAUG--CA-GAACUUC-CGCa-----UGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 87117 0.68 0.947018
Target:  5'- -gGCGUUguaGAAGGgccgcggGUACGCGAGCu -3'
miRNA:   3'- caUGCAGaa-CUUCCg------CAUGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 111669 0.68 0.947018
Target:  5'- -cGCGcCgcggUGgcGGCGUACGUcGGCGa -3'
miRNA:   3'- caUGCaGa---ACuuCCGCAUGCGcUCGC- -5'
23597 3' -52.4 NC_005261.1 + 22768 0.69 0.903401
Target:  5'- -cGCGUC-UGggGGCGggcccCGCGAGa- -3'
miRNA:   3'- caUGCAGaACuuCCGCau---GCGCUCgc -5'
23597 3' -52.4 NC_005261.1 + 68577 0.69 0.909731
Target:  5'- -cGCGUCgccgccGAGGCGggccGCGgGAGCGg -3'
miRNA:   3'- caUGCAGaac---UUCCGCa---UGCgCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 137037 0.69 0.914617
Target:  5'- -gGCGUCggugGAGGGCGgaccgucggcagGCGCGgaGGCGc -3'
miRNA:   3'- caUGCAGaa--CUUCCGCa-----------UGCGC--UCGC- -5'
23597 3' -52.4 NC_005261.1 + 39997 0.69 0.921644
Target:  5'- -gGCGUgcgUGAAGGCGUACGagcagaacuCGGGCc -3'
miRNA:   3'- caUGCAga-ACUUCCGCAUGC---------GCUCGc -5'
23597 3' -52.4 NC_005261.1 + 118909 0.69 0.921644
Target:  5'- cUGCGUCUgGGuccGGCGc-CGCGGGCGc -3'
miRNA:   3'- cAUGCAGAaCUu--CCGCauGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 56472 0.69 0.896823
Target:  5'- -aGCGUCaUGGAGGCGcuggagucuaUGCGCGccucaGGCGc -3'
miRNA:   3'- caUGCAGaACUUCCGC----------AUGCGC-----UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.