Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 23597 | 3' | -52.4 | NC_005261.1 | + | 125401 | 0.69 | 0.921644 |
|
Target: 5'- gGUACGUUccGGA-GCG-GCGCGGGCGg -3' miRNA: 3'- -CAUGCAGaaCUUcCGCaUGCGCUCGC- -5' |
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| 23597 | 3' | -52.4 | NC_005261.1 | + | 109195 | 0.7 | 0.882942 |
|
Target: 5'- -cGCGUC----GGGCGUGCGCaGGCGc -3' miRNA: 3'- caUGCAGaacuUCCGCAUGCGcUCGC- -5' |
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| 23597 | 3' | -52.4 | NC_005261.1 | + | 21006 | 0.71 | 0.835847 |
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Target: 5'- -cGCGcCUUGggGGCGUGacacCGAGCc -3' miRNA: 3'- caUGCaGAACuuCCGCAUgc--GCUCGc -5' |
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| 23597 | 3' | -52.4 | NC_005261.1 | + | 73669 | 0.71 | 0.818506 |
|
Target: 5'- -cACGaCgcgGAGGGCGgGCGCGGGCu -3' miRNA: 3'- caUGCaGaa-CUUCCGCaUGCGCUCGc -5' |
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| 23597 | 3' | -52.4 | NC_005261.1 | + | 121109 | 0.71 | 0.816732 |
|
Target: 5'- cGUGCGgguccucuagggCgcGGAGGCGcggGCGCGAGCGc -3' miRNA: 3'- -CAUGCa-----------GaaCUUCCGCa--UGCGCUCGC- -5' |
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| 23597 | 3' | -52.4 | NC_005261.1 | + | 102868 | 0.72 | 0.800451 |
|
Target: 5'- -cGCGUCcagGAAGGCGaACuCGGGCGg -3' miRNA: 3'- caUGCAGaa-CUUCCGCaUGcGCUCGC- -5' |
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| 23597 | 3' | -52.4 | NC_005261.1 | + | 93001 | 1.08 | 0.006828 |
|
Target: 5'- gGUACGUCUUGAAGGCGUACGCGAGCGc -3' miRNA: 3'- -CAUGCAGAACUUCCGCAUGCGCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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