miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23597 3' -52.4 NC_005261.1 + 93001 1.08 0.006828
Target:  5'- gGUACGUCUUGAAGGCGUACGCGAGCGc -3'
miRNA:   3'- -CAUGCAGAACUUCCGCAUGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 102868 0.72 0.800451
Target:  5'- -cGCGUCcagGAAGGCGaACuCGGGCGg -3'
miRNA:   3'- caUGCAGaa-CUUCCGCaUGcGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 121109 0.71 0.816732
Target:  5'- cGUGCGgguccucuagggCgcGGAGGCGcggGCGCGAGCGc -3'
miRNA:   3'- -CAUGCa-----------GaaCUUCCGCa--UGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 73669 0.71 0.818506
Target:  5'- -cACGaCgcgGAGGGCGgGCGCGGGCu -3'
miRNA:   3'- caUGCaGaa-CUUCCGCaUGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 21006 0.71 0.835847
Target:  5'- -cGCGcCUUGggGGCGUGacacCGAGCc -3'
miRNA:   3'- caUGCaGAACuuCCGCAUgc--GCUCGc -5'
23597 3' -52.4 NC_005261.1 + 109195 0.7 0.882942
Target:  5'- -cGCGUC----GGGCGUGCGCaGGCGc -3'
miRNA:   3'- caUGCAGaacuUCCGCAUGCGcUCGC- -5'
23597 3' -52.4 NC_005261.1 + 56472 0.69 0.896823
Target:  5'- -aGCGUCaUGGAGGCGcuggagucuaUGCGCGccucaGGCGc -3'
miRNA:   3'- caUGCAGaACUUCCGC----------AUGCGC-----UCGC- -5'
23597 3' -52.4 NC_005261.1 + 22768 0.69 0.903401
Target:  5'- -cGCGUC-UGggGGCGggcccCGCGAGa- -3'
miRNA:   3'- caUGCAGaACuuCCGCau---GCGCUCgc -5'
23597 3' -52.4 NC_005261.1 + 68577 0.69 0.909731
Target:  5'- -cGCGUCgccgccGAGGCGggccGCGgGAGCGg -3'
miRNA:   3'- caUGCAGaac---UUCCGCa---UGCgCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 137037 0.69 0.914617
Target:  5'- -gGCGUCggugGAGGGCGgaccgucggcagGCGCGgaGGCGc -3'
miRNA:   3'- caUGCAGaa--CUUCCGCa-----------UGCGC--UCGC- -5'
23597 3' -52.4 NC_005261.1 + 125401 0.69 0.921644
Target:  5'- gGUACGUUccGGA-GCG-GCGCGGGCGg -3'
miRNA:   3'- -CAUGCAGaaCUUcCGCaUGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 39997 0.69 0.921644
Target:  5'- -gGCGUgcgUGAAGGCGUACGagcagaacuCGGGCc -3'
miRNA:   3'- caUGCAga-ACUUCCGCAUGC---------GCUCGc -5'
23597 3' -52.4 NC_005261.1 + 118909 0.69 0.921644
Target:  5'- cUGCGUCUgGGuccGGCGc-CGCGGGCGc -3'
miRNA:   3'- cAUGCAGAaCUu--CCGCauGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 102743 0.68 0.927222
Target:  5'- -gGCGuUCUUcAGGGCGcuugccgcggACGCGAGCGc -3'
miRNA:   3'- caUGC-AGAAcUUCCGCa---------UGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 29340 0.68 0.932548
Target:  5'- cGUGCG-CUUc--GGCG-GCGCGGGCGa -3'
miRNA:   3'- -CAUGCaGAAcuuCCGCaUGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 39785 0.68 0.937621
Target:  5'- -gACGUCgccgGggGGCG-GCGCG-GCc -3'
miRNA:   3'- caUGCAGaa--CuuCCGCaUGCGCuCGc -5'
23597 3' -52.4 NC_005261.1 + 49417 0.68 0.937621
Target:  5'- gGUGCuuGUaCUUGAAGcGCGgaaacaGCGCGAGCc -3'
miRNA:   3'- -CAUG--CA-GAACUUC-CGCa-----UGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 87117 0.68 0.947018
Target:  5'- -gGCGUUguaGAAGGgccgcggGUACGCGAGCu -3'
miRNA:   3'- caUGCAGaa-CUUCCg------CAUGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 111669 0.68 0.947018
Target:  5'- -cGCGcCgcggUGgcGGCGUACGUcGGCGa -3'
miRNA:   3'- caUGCaGa---ACuuCCGCAUGCGcUCGC- -5'
23597 3' -52.4 NC_005261.1 + 59103 0.67 0.951345
Target:  5'- -cGCG-CUcGcAGGCGcGCGCGAGCu -3'
miRNA:   3'- caUGCaGAaCuUCCGCaUGCGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.