Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23597 | 3' | -52.4 | NC_005261.1 | + | 70442 | 0.67 | 0.951345 |
Target: 5'- -gACGUCgauccccugGAGGGUGUACGUcAGCc -3' miRNA: 3'- caUGCAGaa-------CUUCCGCAUGCGcUCGc -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 108578 | 0.67 | 0.955429 |
Target: 5'- cGUGCG-CgcGAAGGCGUugGCcucgcccacGGGCa -3' miRNA: 3'- -CAUGCaGaaCUUCCGCAugCG---------CUCGc -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 13670 | 0.67 | 0.959274 |
Target: 5'- -cGCGgg--GggGGCGcggggcGCGCGGGCGu -3' miRNA: 3'- caUGCagaaCuuCCGCa-----UGCGCUCGC- -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 122617 | 0.67 | 0.959274 |
Target: 5'- cGUGCcugugCUUGAAcGGCGaGCGCGAGg- -3' miRNA: 3'- -CAUGca---GAACUU-CCGCaUGCGCUCgc -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 48318 | 0.67 | 0.961468 |
Target: 5'- -cGCGUCgggcccgggcucGggGGCGcGCGCG-GCGa -3' miRNA: 3'- caUGCAGaa----------CuuCCGCaUGCGCuCGC- -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 53278 | 0.67 | 0.962534 |
Target: 5'- -cAUGUCgaUGGAGGCGccaagcgcccccgUGCGCGGGuCGa -3' miRNA: 3'- caUGCAGa-ACUUCCGC-------------AUGCGCUC-GC- -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 73591 | 0.67 | 0.962885 |
Target: 5'- -cGCGgc--GGAGGCGgcggcCGCGAGCGc -3' miRNA: 3'- caUGCagaaCUUCCGCau---GCGCUCGC- -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 3438 | 0.67 | 0.966266 |
Target: 5'- -aGCGUCc---AGGCGggcGCGCGGGCc -3' miRNA: 3'- caUGCAGaacuUCCGCa--UGCGCUCGc -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 33808 | 0.67 | 0.966266 |
Target: 5'- -gGCGggCUUGucuuuGGGCGgccgggggGCGCGGGCc -3' miRNA: 3'- caUGCa-GAACu----UCCGCa-------UGCGCUCGc -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 127736 | 0.67 | 0.966266 |
Target: 5'- -aGCGggagCUUGgcGGCGggaGCGGGCc -3' miRNA: 3'- caUGCa---GAACuuCCGCaugCGCUCGc -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 99009 | 0.67 | 0.966266 |
Target: 5'- -aGCGUCgcGAGcGGCG-GCGCG-GCGg -3' miRNA: 3'- caUGCAGaaCUU-CCGCaUGCGCuCGC- -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 72180 | 0.66 | 0.969118 |
Target: 5'- -gGCGUCcgagacgUUGgcGGCGgcCGCGcGCGg -3' miRNA: 3'- caUGCAG-------AACuuCCGCauGCGCuCGC- -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 125800 | 0.66 | 0.969424 |
Target: 5'- -aACGgggCUUGGgccgGGGCcgcCGCGAGCGg -3' miRNA: 3'- caUGCa--GAACU----UCCGcauGCGCUCGC- -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 30203 | 0.66 | 0.969424 |
Target: 5'- -cGCG-CU-GGAGGCGgcCGCGcuGGCGg -3' miRNA: 3'- caUGCaGAaCUUCCGCauGCGC--UCGC- -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 69745 | 0.66 | 0.972365 |
Target: 5'- -gGCGgaggaGGAGGCGaGCGCGGGgGg -3' miRNA: 3'- caUGCagaa-CUUCCGCaUGCGCUCgC- -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 107793 | 0.66 | 0.972365 |
Target: 5'- -cACGUUagGAGGGCcucGCGCGcGGCGg -3' miRNA: 3'- caUGCAGaaCUUCCGca-UGCGC-UCGC- -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 98345 | 0.66 | 0.972365 |
Target: 5'- --gUGUCgacgcGggGGCGgggguggGCGCGGGCu -3' miRNA: 3'- cauGCAGaa---CuuCCGCa------UGCGCUCGc -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 134893 | 0.66 | 0.975097 |
Target: 5'- uGUGCGUUcgguggUGGAGcGgGUGCGCaAGCGc -3' miRNA: 3'- -CAUGCAGa-----ACUUC-CgCAUGCGcUCGC- -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 71086 | 0.66 | 0.975097 |
Target: 5'- -gGCGUCcgggcccgaGAAGGCGUacacgGCGCGcAGCu -3' miRNA: 3'- caUGCAGaa-------CUUCCGCA-----UGCGC-UCGc -5' |
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23597 | 3' | -52.4 | NC_005261.1 | + | 19476 | 0.66 | 0.977626 |
Target: 5'- --cCGUCUUGAcgucccgauGGGCGauccgGCGgGAGUGc -3' miRNA: 3'- cauGCAGAACU---------UCCGCa----UGCgCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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