miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23597 3' -52.4 NC_005261.1 + 3438 0.67 0.966266
Target:  5'- -aGCGUCc---AGGCGggcGCGCGGGCc -3'
miRNA:   3'- caUGCAGaacuUCCGCa--UGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 13670 0.67 0.959274
Target:  5'- -cGCGgg--GggGGCGcggggcGCGCGGGCGu -3'
miRNA:   3'- caUGCagaaCuuCCGCa-----UGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 15706 0.66 0.979961
Target:  5'- uUGCGUCggcugggUGGAcGGCGaACGCGA-CGg -3'
miRNA:   3'- cAUGCAGa------ACUU-CCGCaUGCGCUcGC- -5'
23597 3' -52.4 NC_005261.1 + 19476 0.66 0.977626
Target:  5'- --cCGUCUUGAcgucccgauGGGCGauccgGCGgGAGUGc -3'
miRNA:   3'- cauGCAGAACU---------UCCGCa----UGCgCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 21006 0.71 0.835847
Target:  5'- -cGCGcCUUGggGGCGUGacacCGAGCc -3'
miRNA:   3'- caUGCaGAACuuCCGCAUgc--GCUCGc -5'
23597 3' -52.4 NC_005261.1 + 22768 0.69 0.903401
Target:  5'- -cGCGUC-UGggGGCGggcccCGCGAGa- -3'
miRNA:   3'- caUGCAGaACuuCCGCau---GCGCUCgc -5'
23597 3' -52.4 NC_005261.1 + 29340 0.68 0.932548
Target:  5'- cGUGCG-CUUc--GGCG-GCGCGGGCGa -3'
miRNA:   3'- -CAUGCaGAAcuuCCGCaUGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 30203 0.66 0.969424
Target:  5'- -cGCG-CU-GGAGGCGgcCGCGcuGGCGg -3'
miRNA:   3'- caUGCaGAaCUUCCGCauGCGC--UCGC- -5'
23597 3' -52.4 NC_005261.1 + 33808 0.67 0.966266
Target:  5'- -gGCGggCUUGucuuuGGGCGgccgggggGCGCGGGCc -3'
miRNA:   3'- caUGCa-GAACu----UCCGCa-------UGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 39785 0.68 0.937621
Target:  5'- -gACGUCgccgGggGGCG-GCGCG-GCc -3'
miRNA:   3'- caUGCAGaa--CuuCCGCaUGCGCuCGc -5'
23597 3' -52.4 NC_005261.1 + 39997 0.69 0.921644
Target:  5'- -gGCGUgcgUGAAGGCGUACGagcagaacuCGGGCc -3'
miRNA:   3'- caUGCAga-ACUUCCGCAUGC---------GCUCGc -5'
23597 3' -52.4 NC_005261.1 + 43781 0.66 0.977626
Target:  5'- -gGCGgcgCgcgGAGGGCGc-CGCGGGUGa -3'
miRNA:   3'- caUGCa--Gaa-CUUCCGCauGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 48318 0.67 0.961468
Target:  5'- -cGCGUCgggcccgggcucGggGGCGcGCGCG-GCGa -3'
miRNA:   3'- caUGCAGaa----------CuuCCGCaUGCGCuCGC- -5'
23597 3' -52.4 NC_005261.1 + 49417 0.68 0.937621
Target:  5'- gGUGCuuGUaCUUGAAGcGCGgaaacaGCGCGAGCc -3'
miRNA:   3'- -CAUG--CA-GAACUUC-CGCa-----UGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 53278 0.67 0.962534
Target:  5'- -cAUGUCgaUGGAGGCGccaagcgcccccgUGCGCGGGuCGa -3'
miRNA:   3'- caUGCAGa-ACUUCCGC-------------AUGCGCUC-GC- -5'
23597 3' -52.4 NC_005261.1 + 56472 0.69 0.896823
Target:  5'- -aGCGUCaUGGAGGCGcuggagucuaUGCGCGccucaGGCGc -3'
miRNA:   3'- caUGCAGaACUUCCGC----------AUGCGC-----UCGC- -5'
23597 3' -52.4 NC_005261.1 + 58095 0.66 0.982109
Target:  5'- -cGCGUCcuc-GGGCGgcaccagccGCGCGAGCa -3'
miRNA:   3'- caUGCAGaacuUCCGCa--------UGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 59103 0.67 0.951345
Target:  5'- -cGCG-CUcGcAGGCGcGCGCGAGCu -3'
miRNA:   3'- caUGCaGAaCuUCCGCaUGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 68577 0.69 0.909731
Target:  5'- -cGCGUCgccgccGAGGCGggccGCGgGAGCGg -3'
miRNA:   3'- caUGCAGaac---UUCCGCa---UGCgCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 69745 0.66 0.972365
Target:  5'- -gGCGgaggaGGAGGCGaGCGCGGGgGg -3'
miRNA:   3'- caUGCagaa-CUUCCGCaUGCGCUCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.