miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23597 3' -52.4 NC_005261.1 + 70442 0.67 0.951345
Target:  5'- -gACGUCgauccccugGAGGGUGUACGUcAGCc -3'
miRNA:   3'- caUGCAGaa-------CUUCCGCAUGCGcUCGc -5'
23597 3' -52.4 NC_005261.1 + 71086 0.66 0.975097
Target:  5'- -gGCGUCcgggcccgaGAAGGCGUacacgGCGCGcAGCu -3'
miRNA:   3'- caUGCAGaa-------CUUCCGCA-----UGCGC-UCGc -5'
23597 3' -52.4 NC_005261.1 + 72180 0.66 0.969118
Target:  5'- -gGCGUCcgagacgUUGgcGGCGgcCGCGcGCGg -3'
miRNA:   3'- caUGCAG-------AACuuCCGCauGCGCuCGC- -5'
23597 3' -52.4 NC_005261.1 + 73591 0.67 0.962885
Target:  5'- -cGCGgc--GGAGGCGgcggcCGCGAGCGc -3'
miRNA:   3'- caUGCagaaCUUCCGCau---GCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 73669 0.71 0.818506
Target:  5'- -cACGaCgcgGAGGGCGgGCGCGGGCu -3'
miRNA:   3'- caUGCaGaa-CUUCCGCaUGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 74840 0.66 0.977626
Target:  5'- -cGCGgacCUggGGAGGCGgcGCGCcGGGCGg -3'
miRNA:   3'- caUGCa--GAa-CUUCCGCa-UGCG-CUCGC- -5'
23597 3' -52.4 NC_005261.1 + 74920 0.66 0.980184
Target:  5'- -cGCGggg-GAGGGCGaggacggggacugcgGCGCGGGCGc -3'
miRNA:   3'- caUGCagaaCUUCCGCa--------------UGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 79791 0.66 0.982109
Target:  5'- aGUACGUCacGGccauGGCGUcccccaacauGCGCGcGGCGg -3'
miRNA:   3'- -CAUGCAGaaCUu---CCGCA----------UGCGC-UCGC- -5'
23597 3' -52.4 NC_005261.1 + 83647 0.66 0.979961
Target:  5'- cGUACGUCagcggcgUG-AGGCGgacGCGCGccugGGCGc -3'
miRNA:   3'- -CAUGCAGa------ACuUCCGCa--UGCGC----UCGC- -5'
23597 3' -52.4 NC_005261.1 + 87117 0.68 0.947018
Target:  5'- -gGCGUUguaGAAGGgccgcggGUACGCGAGCu -3'
miRNA:   3'- caUGCAGaa-CUUCCg------CAUGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 93001 1.08 0.006828
Target:  5'- gGUACGUCUUGAAGGCGUACGCGAGCGc -3'
miRNA:   3'- -CAUGCAGAACUUCCGCAUGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 98345 0.66 0.972365
Target:  5'- --gUGUCgacgcGggGGCGgggguggGCGCGGGCu -3'
miRNA:   3'- cauGCAGaa---CuuCCGCa------UGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 99009 0.67 0.966266
Target:  5'- -aGCGUCgcGAGcGGCG-GCGCG-GCGg -3'
miRNA:   3'- caUGCAGaaCUU-CCGCaUGCGCuCGC- -5'
23597 3' -52.4 NC_005261.1 + 102743 0.68 0.927222
Target:  5'- -gGCGuUCUUcAGGGCGcuugccgcggACGCGAGCGc -3'
miRNA:   3'- caUGC-AGAAcUUCCGCa---------UGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 102868 0.72 0.800451
Target:  5'- -cGCGUCcagGAAGGCGaACuCGGGCGg -3'
miRNA:   3'- caUGCAGaa-CUUCCGCaUGcGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 107793 0.66 0.972365
Target:  5'- -cACGUUagGAGGGCcucGCGCGcGGCGg -3'
miRNA:   3'- caUGCAGaaCUUCCGca-UGCGC-UCGC- -5'
23597 3' -52.4 NC_005261.1 + 108578 0.67 0.955429
Target:  5'- cGUGCG-CgcGAAGGCGUugGCcucgcccacGGGCa -3'
miRNA:   3'- -CAUGCaGaaCUUCCGCAugCG---------CUCGc -5'
23597 3' -52.4 NC_005261.1 + 109195 0.7 0.882942
Target:  5'- -cGCGUC----GGGCGUGCGCaGGCGc -3'
miRNA:   3'- caUGCAGaacuUCCGCAUGCGcUCGC- -5'
23597 3' -52.4 NC_005261.1 + 111669 0.68 0.947018
Target:  5'- -cGCGcCgcggUGgcGGCGUACGUcGGCGa -3'
miRNA:   3'- caUGCaGa---ACuuCCGCAUGCGcUCGC- -5'
23597 3' -52.4 NC_005261.1 + 118909 0.69 0.921644
Target:  5'- cUGCGUCUgGGuccGGCGc-CGCGGGCGc -3'
miRNA:   3'- cAUGCAGAaCUu--CCGCauGCGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.