miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23597 3' -52.4 NC_005261.1 + 137037 0.69 0.914617
Target:  5'- -gGCGUCggugGAGGGCGgaccgucggcagGCGCGgaGGCGc -3'
miRNA:   3'- caUGCAGaa--CUUCCGCa-----------UGCGC--UCGC- -5'
23597 3' -52.4 NC_005261.1 + 134893 0.66 0.975097
Target:  5'- uGUGCGUUcgguggUGGAGcGgGUGCGCaAGCGc -3'
miRNA:   3'- -CAUGCAGa-----ACUUC-CgCAUGCGcUCGC- -5'
23597 3' -52.4 NC_005261.1 + 127736 0.67 0.966266
Target:  5'- -aGCGggagCUUGgcGGCGggaGCGGGCc -3'
miRNA:   3'- caUGCa---GAACuuCCGCaugCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 125800 0.66 0.969424
Target:  5'- -aACGgggCUUGGgccgGGGCcgcCGCGAGCGg -3'
miRNA:   3'- caUGCa--GAACU----UCCGcauGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 125401 0.69 0.921644
Target:  5'- gGUACGUUccGGA-GCG-GCGCGGGCGg -3'
miRNA:   3'- -CAUGCAGaaCUUcCGCaUGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 122617 0.67 0.959274
Target:  5'- cGUGCcugugCUUGAAcGGCGaGCGCGAGg- -3'
miRNA:   3'- -CAUGca---GAACUU-CCGCaUGCGCUCgc -5'
23597 3' -52.4 NC_005261.1 + 121109 0.71 0.816732
Target:  5'- cGUGCGgguccucuagggCgcGGAGGCGcggGCGCGAGCGc -3'
miRNA:   3'- -CAUGCa-----------GaaCUUCCGCa--UGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 118909 0.69 0.921644
Target:  5'- cUGCGUCUgGGuccGGCGc-CGCGGGCGc -3'
miRNA:   3'- cAUGCAGAaCUu--CCGCauGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 111669 0.68 0.947018
Target:  5'- -cGCGcCgcggUGgcGGCGUACGUcGGCGa -3'
miRNA:   3'- caUGCaGa---ACuuCCGCAUGCGcUCGC- -5'
23597 3' -52.4 NC_005261.1 + 109195 0.7 0.882942
Target:  5'- -cGCGUC----GGGCGUGCGCaGGCGc -3'
miRNA:   3'- caUGCAGaacuUCCGCAUGCGcUCGC- -5'
23597 3' -52.4 NC_005261.1 + 108578 0.67 0.955429
Target:  5'- cGUGCG-CgcGAAGGCGUugGCcucgcccacGGGCa -3'
miRNA:   3'- -CAUGCaGaaCUUCCGCAugCG---------CUCGc -5'
23597 3' -52.4 NC_005261.1 + 107793 0.66 0.972365
Target:  5'- -cACGUUagGAGGGCcucGCGCGcGGCGg -3'
miRNA:   3'- caUGCAGaaCUUCCGca-UGCGC-UCGC- -5'
23597 3' -52.4 NC_005261.1 + 102868 0.72 0.800451
Target:  5'- -cGCGUCcagGAAGGCGaACuCGGGCGg -3'
miRNA:   3'- caUGCAGaa-CUUCCGCaUGcGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 102743 0.68 0.927222
Target:  5'- -gGCGuUCUUcAGGGCGcuugccgcggACGCGAGCGc -3'
miRNA:   3'- caUGC-AGAAcUUCCGCa---------UGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 99009 0.67 0.966266
Target:  5'- -aGCGUCgcGAGcGGCG-GCGCG-GCGg -3'
miRNA:   3'- caUGCAGaaCUU-CCGCaUGCGCuCGC- -5'
23597 3' -52.4 NC_005261.1 + 98345 0.66 0.972365
Target:  5'- --gUGUCgacgcGggGGCGgggguggGCGCGGGCu -3'
miRNA:   3'- cauGCAGaa---CuuCCGCa------UGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 93001 1.08 0.006828
Target:  5'- gGUACGUCUUGAAGGCGUACGCGAGCGc -3'
miRNA:   3'- -CAUGCAGAACUUCCGCAUGCGCUCGC- -5'
23597 3' -52.4 NC_005261.1 + 87117 0.68 0.947018
Target:  5'- -gGCGUUguaGAAGGgccgcggGUACGCGAGCu -3'
miRNA:   3'- caUGCAGaa-CUUCCg------CAUGCGCUCGc -5'
23597 3' -52.4 NC_005261.1 + 83647 0.66 0.979961
Target:  5'- cGUACGUCagcggcgUG-AGGCGgacGCGCGccugGGCGc -3'
miRNA:   3'- -CAUGCAGa------ACuUCCGCa--UGCGC----UCGC- -5'
23597 3' -52.4 NC_005261.1 + 79791 0.66 0.982109
Target:  5'- aGUACGUCacGGccauGGCGUcccccaacauGCGCGcGGCGg -3'
miRNA:   3'- -CAUGCAGaaCUu---CCGCA----------UGCGC-UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.