miRNA display CGI


Results 21 - 40 of 498 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23597 5' -61.2 NC_005261.1 + 124272 0.66 0.690628
Target:  5'- gCCCGCGCGCcC-CGGCCg-CGAcaaaaaauGGCa -3'
miRNA:   3'- -GGGCGCGUGuGcGCCGGgaGCU--------UCGa -5'
23597 5' -61.2 NC_005261.1 + 132217 0.66 0.690628
Target:  5'- gCCCGCGC-CACGCGaGCaguaCUaCGugaaccgcaacGAGCUg -3'
miRNA:   3'- -GGGCGCGuGUGCGC-CGg---GA-GC-----------UUCGA- -5'
23597 5' -61.2 NC_005261.1 + 1892 0.66 0.690628
Target:  5'- -gCGCGCGCcaGCGCGcGCCgCUC-AGGCc -3'
miRNA:   3'- ggGCGCGUG--UGCGC-CGG-GAGcUUCGa -5'
23597 5' -61.2 NC_005261.1 + 115412 0.66 0.690628
Target:  5'- aCCGCGgGCGgcagccggggcCGCGGCCC---GAGCUc -3'
miRNA:   3'- gGGCGCgUGU-----------GCGCCGGGagcUUCGA- -5'
23597 5' -61.2 NC_005261.1 + 119128 0.66 0.690628
Target:  5'- gCCGCGgcCGCgGCGCGGCCauCUCGGAuccGCc -3'
miRNA:   3'- gGGCGC--GUG-UGCGCCGG--GAGCUU---CGa -5'
23597 5' -61.2 NC_005261.1 + 14784 0.66 0.690628
Target:  5'- cCCCGCGCAgGUGCcGCUCcCGcAGGCUg -3'
miRNA:   3'- -GGGCGCGUgUGCGcCGGGaGC-UUCGA- -5'
23597 5' -61.2 NC_005261.1 + 57460 0.66 0.684763
Target:  5'- gUCCGCGaagaGCACGCGGaacaggcucgaguccCCCgCGAcgGGCa -3'
miRNA:   3'- -GGGCGCg---UGUGCGCC---------------GGGaGCU--UCGa -5'
23597 5' -61.2 NC_005261.1 + 136618 0.66 0.684763
Target:  5'- -gCGCGCGCGCGCcgagggcggcgggaaGGCCUgguccgccUGGAGCUc -3'
miRNA:   3'- ggGCGCGUGUGCG---------------CCGGGa-------GCUUCGA- -5'
23597 5' -61.2 NC_005261.1 + 63585 0.66 0.680845
Target:  5'- nCCCGaagaGCgGCGCGgGGCCCUguggcCGGAuGCg -3'
miRNA:   3'- -GGGCg---CG-UGUGCgCCGGGA-----GCUU-CGa -5'
23597 5' -61.2 NC_005261.1 + 70265 0.66 0.680845
Target:  5'- gUCCGCGaugaGCACGauguccaugaCGGCCCcCGAgGGCa -3'
miRNA:   3'- -GGGCGCg---UGUGC----------GCCGGGaGCU-UCGa -5'
23597 5' -61.2 NC_005261.1 + 105296 0.66 0.680845
Target:  5'- gCCCGgGCGCGCGagcgcggGGUCCUCGcAcuccgccccGGCg -3'
miRNA:   3'- -GGGCgCGUGUGCg------CCGGGAGC-U---------UCGa -5'
23597 5' -61.2 NC_005261.1 + 111565 0.66 0.680845
Target:  5'- gCCCG-GCcgACGCGGCagagcagCUCGAGGCc -3'
miRNA:   3'- -GGGCgCGugUGCGCCGg------GAGCUUCGa -5'
23597 5' -61.2 NC_005261.1 + 12655 0.66 0.680845
Target:  5'- gCCGCGCcgGCGCGacaucgucGUCCUCG-AGCg -3'
miRNA:   3'- gGGCGCGugUGCGC--------CGGGAGCuUCGa -5'
23597 5' -61.2 NC_005261.1 + 17166 0.66 0.680845
Target:  5'- aCCCGCgGCGCGgGCGugggcaGCCCUgcCGcGGCg -3'
miRNA:   3'- -GGGCG-CGUGUgCGC------CGGGA--GCuUCGa -5'
23597 5' -61.2 NC_005261.1 + 53555 0.66 0.680845
Target:  5'- gCCGCGC---CGCGGCCCaggCGcacuAGCg -3'
miRNA:   3'- gGGCGCGuguGCGCCGGGa--GCu---UCGa -5'
23597 5' -61.2 NC_005261.1 + 58557 0.66 0.680845
Target:  5'- uCCUGCGC-CGuCGUGGCCg-CGAgcGGCg -3'
miRNA:   3'- -GGGCGCGuGU-GCGCCGGgaGCU--UCGa -5'
23597 5' -61.2 NC_005261.1 + 70990 0.66 0.680845
Target:  5'- gUgGCGCGCGgGCGGCCgccaggccagCUCGccGCg -3'
miRNA:   3'- gGgCGCGUGUgCGCCGG----------GAGCuuCGa -5'
23597 5' -61.2 NC_005261.1 + 71439 0.66 0.680845
Target:  5'- gCCCGCgGCGCGCaGCcgccGCCUccCGGAGCa -3'
miRNA:   3'- -GGGCG-CGUGUG-CGc---CGGGa-GCUUCGa -5'
23597 5' -61.2 NC_005261.1 + 105219 0.66 0.680845
Target:  5'- gCCGCGCGgGcCGCGGCCg-CGGccgugaucugcGGCg -3'
miRNA:   3'- gGGCGCGUgU-GCGCCGGgaGCU-----------UCGa -5'
23597 5' -61.2 NC_005261.1 + 19303 0.66 0.680845
Target:  5'- gCCCGCGCuccACACguccguGCGGCagUCGuAGCg -3'
miRNA:   3'- -GGGCGCG---UGUG------CGCCGggAGCuUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.