miRNA display CGI


Results 81 - 100 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 106961 0.66 0.947841
Target:  5'- gGGCGCGCUccgccucgGCGcGCGCGccgcGCAccgCGUCg -3'
miRNA:   3'- -CCGCGUGG--------UGCuCGUGCu---UGUa--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 104307 0.66 0.947841
Target:  5'- cGCGCGCUcaaaGAGCgcGCGGACGcgcgCGUCc -3'
miRNA:   3'- cCGCGUGGug--CUCG--UGCUUGUa---GCAG- -5'
23598 3' -54.2 NC_005261.1 + 96595 0.66 0.947841
Target:  5'- cGGCGCucuGCCGC-AGCACGucGCG-CGUg -3'
miRNA:   3'- -CCGCG---UGGUGcUCGUGCu-UGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 87369 0.66 0.947841
Target:  5'- aGCGCccACCGCGcGGCAgauguccuCGGcCGUCGUCu -3'
miRNA:   3'- cCGCG--UGGUGC-UCGU--------GCUuGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 81533 0.66 0.947841
Target:  5'- aGGCGCugcaggACCGCguaGAGCAgcgaGAACA-CGUCc -3'
miRNA:   3'- -CCGCG------UGGUG---CUCGUg---CUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 81282 0.66 0.947841
Target:  5'- uGCGCgaGCCG-GAGCGCGGcgcGCA-CGUCc -3'
miRNA:   3'- cCGCG--UGGUgCUCGUGCU---UGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 77337 0.66 0.947841
Target:  5'- cGGCGCcgccccccGCCAUGAGCGCaguGCAccaggccagcgCGUCu -3'
miRNA:   3'- -CCGCG--------UGGUGCUCGUGcu-UGUa----------GCAG- -5'
23598 3' -54.2 NC_005261.1 + 135764 0.66 0.947841
Target:  5'- cGGUGCGCUccggcGCaGAGCGCGuGCcgCuGUCg -3'
miRNA:   3'- -CCGCGUGG-----UG-CUCGUGCuUGuaG-CAG- -5'
23598 3' -54.2 NC_005261.1 + 119789 0.66 0.949558
Target:  5'- cGCGUACCGC-AGCGCGGagcugggcggcaacuACAUCuUCc -3'
miRNA:   3'- cCGCGUGGUGcUCGUGCU---------------UGUAGcAG- -5'
23598 3' -54.2 NC_005261.1 + 15541 0.66 0.952063
Target:  5'- aGGCGUcguUCGCGAcGCGCGGGCAggaggCGa- -3'
miRNA:   3'- -CCGCGu--GGUGCU-CGUGCUUGUa----GCag -5'
23598 3' -54.2 NC_005261.1 + 62361 0.66 0.952063
Target:  5'- cGCGCGCCACcAGCucgcgcgccuGCGGcagcgGCAcCGUCg -3'
miRNA:   3'- cCGCGUGGUGcUCG----------UGCU-----UGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 57887 0.66 0.952063
Target:  5'- cGGC-CGgCACGGGgACGGccACcgCGUCg -3'
miRNA:   3'- -CCGcGUgGUGCUCgUGCU--UGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 52624 0.66 0.952063
Target:  5'- cGGCGCcuUCGCGcGGUACGGuACA-CGUCu -3'
miRNA:   3'- -CCGCGu-GGUGC-UCGUGCU-UGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 18703 0.66 0.952063
Target:  5'- cGGCGCACgucgGCGaAGCA--GAgAUCGUCg -3'
miRNA:   3'- -CCGCGUGg---UGC-UCGUgcUUgUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 14355 0.66 0.952063
Target:  5'- cGGCaGCAgCCGCGgccggggcGGCGCGGuggcccGCAUCGcCa -3'
miRNA:   3'- -CCG-CGU-GGUGC--------UCGUGCU------UGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 4481 0.66 0.952063
Target:  5'- cGCgGCGCCGCGGcguagccuGCGCGGGCcccaGUCg -3'
miRNA:   3'- cCG-CGUGGUGCU--------CGUGCUUGuag-CAG- -5'
23598 3' -54.2 NC_005261.1 + 2500 0.66 0.952063
Target:  5'- gGGUGguCCGCGAGC-CGcGCcgCGa- -3'
miRNA:   3'- -CCGCguGGUGCUCGuGCuUGuaGCag -5'
23598 3' -54.2 NC_005261.1 + 90260 0.66 0.952063
Target:  5'- gGGCGCcaagguCCugGAGCcCGAgucgggcuuccACGUCGa- -3'
miRNA:   3'- -CCGCGu-----GGugCUCGuGCU-----------UGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 90227 0.66 0.952063
Target:  5'- -uCGCGCgGCGGGCGgGcGCGcCGUCg -3'
miRNA:   3'- ccGCGUGgUGCUCGUgCuUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 72778 0.66 0.947841
Target:  5'- cGGcCGCGCaCGCGuccggGGcCGCGGACA-CGUCc -3'
miRNA:   3'- -CC-GCGUG-GUGC-----UC-GUGCUUGUaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.