miRNA display CGI


Results 101 - 120 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 90227 0.66 0.952063
Target:  5'- -uCGCGCgGCGGGCGgGcGCGcCGUCg -3'
miRNA:   3'- ccGCGUGgUGCUCGUgCuUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 93692 0.67 0.926394
Target:  5'- cGGgGCGCCgGCGGGUGCcucuuccuccuCGUCGUCg -3'
miRNA:   3'- -CCgCGUGG-UGCUCGUGcuu--------GUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 94632 0.67 0.923103
Target:  5'- cGGCGCcgucguCgGCGcGCGCGAACAUgCGg- -3'
miRNA:   3'- -CCGCGu-----GgUGCuCGUGCUUGUA-GCag -5'
23598 3' -54.2 NC_005261.1 + 46491 0.67 0.923103
Target:  5'- cGGCGCccuCCGCgGGGCGC-AGCccggCGUCg -3'
miRNA:   3'- -CCGCGu--GGUG-CUCGUGcUUGua--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 135102 0.67 0.923103
Target:  5'- cGGCGgAgCGCGAG-GCGGACcccgCGUCu -3'
miRNA:   3'- -CCGCgUgGUGCUCgUGCUUGua--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 98061 0.67 0.923103
Target:  5'- cGGCGgGaCCGCGGGCGgCGggUGU-GUCc -3'
miRNA:   3'- -CCGCgU-GGUGCUCGU-GCuuGUAgCAG- -5'
23598 3' -54.2 NC_005261.1 + 82692 0.67 0.923103
Target:  5'- gGGCGCcaccGCCGCGcucccCACGAGCAggcaGUCc -3'
miRNA:   3'- -CCGCG----UGGUGCuc---GUGCUUGUag--CAG- -5'
23598 3' -54.2 NC_005261.1 + 68405 0.67 0.923103
Target:  5'- cGgGUACCACGA-CAcCGAGCGgcgCGUCc -3'
miRNA:   3'- cCgCGUGGUGCUcGU-GCUUGUa--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 55606 0.67 0.923103
Target:  5'- uGCGCuccuCCugGuccagcAGCGCGuccuccGCGUCGUCa -3'
miRNA:   3'- cCGCGu---GGugC------UCGUGCu-----UGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 94686 0.67 0.928007
Target:  5'- aGGCGCugGCCAccgaggacguggcCGAGCugGAGCGcCGc- -3'
miRNA:   3'- -CCGCG--UGGU-------------GCUCGugCUUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 116678 0.67 0.928007
Target:  5'- cGGCGCcggcccaAUCGCGAGCGCcucgcuCAUCGg- -3'
miRNA:   3'- -CCGCG-------UGGUGCUCGUGcuu---GUAGCag -5'
23598 3' -54.2 NC_005261.1 + 106467 0.67 0.928539
Target:  5'- gGGCGU-CCAaGAGCGCcGGGCuccccUCGUCg -3'
miRNA:   3'- -CCGCGuGGUgCUCGUG-CUUGu----AGCAG- -5'
23598 3' -54.2 NC_005261.1 + 62202 0.67 0.928539
Target:  5'- uGUGCAgCGCGAggguGCGCGcGGCcgCGUCu -3'
miRNA:   3'- cCGCGUgGUGCU----CGUGC-UUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 59255 0.67 0.928539
Target:  5'- gGGCGCcggcGCCACGcgucGCACG-GCGU-GUCg -3'
miRNA:   3'- -CCGCG----UGGUGCu---CGUGCuUGUAgCAG- -5'
23598 3' -54.2 NC_005261.1 + 46568 0.67 0.928539
Target:  5'- aGCGCuGCUGCGAGCGCG-GCcUCG-Cg -3'
miRNA:   3'- cCGCG-UGGUGCUCGUGCuUGuAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 44321 0.67 0.928539
Target:  5'- gGGCGCcgcagacggggGgCugGGGCACGAGguCAUCGa- -3'
miRNA:   3'- -CCGCG-----------UgGugCUCGUGCUU--GUAGCag -5'
23598 3' -54.2 NC_005261.1 + 20252 0.67 0.928539
Target:  5'- cGCGCuCCAUGGGCGCcgaGAACcgccggGUCGUg -3'
miRNA:   3'- cCGCGuGGUGCUCGUG---CUUG------UAGCAg -5'
23598 3' -54.2 NC_005261.1 + 5488 0.67 0.928539
Target:  5'- cGCGCGCCGgGggguAGCugGGGCcgCGg- -3'
miRNA:   3'- cCGCGUGGUgC----UCGugCUUGuaGCag -5'
23598 3' -54.2 NC_005261.1 + 124580 0.67 0.928539
Target:  5'- cGCGCACCACGcGCugaucguUGGGCggCGUg -3'
miRNA:   3'- cCGCGUGGUGCuCGu------GCUUGuaGCAg -5'
23598 3' -54.2 NC_005261.1 + 47624 0.67 0.923103
Target:  5'- gGGCG-GCCGCGGccgccGCGCGcACcgCGUCc -3'
miRNA:   3'- -CCGCgUGGUGCU-----CGUGCuUGuaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.