miRNA display CGI


Results 101 - 120 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 119661 0.7 0.786617
Target:  5'- cGCGCGCCugGAGCucUGGuucCAgcgCGUCg -3'
miRNA:   3'- cCGCGUGGugCUCGu-GCUu--GUa--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 107257 0.7 0.786617
Target:  5'- cGCGgGCgCGCGGGCACGGGCGggCG-Cg -3'
miRNA:   3'- cCGCgUG-GUGCUCGUGCUUGUa-GCaG- -5'
23598 3' -54.2 NC_005261.1 + 79611 0.7 0.785688
Target:  5'- gGGCGCAgggcuCCACGAGCucGCGGcccggcaGCAgcUCGUUg -3'
miRNA:   3'- -CCGCGU-----GGUGCUCG--UGCU-------UGU--AGCAG- -5'
23598 3' -54.2 NC_005261.1 + 76912 0.7 0.786617
Target:  5'- cGCGCugUGCGuGCugGGccGCcgCGUCg -3'
miRNA:   3'- cCGCGugGUGCuCGugCU--UGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 125468 0.7 0.785688
Target:  5'- gGGCGCcgagaaaGCCGCGGGCGCGAAaacuaaAUCc-- -3'
miRNA:   3'- -CCGCG-------UGGUGCUCGUGCUUg-----UAGcag -5'
23598 3' -54.2 NC_005261.1 + 74561 0.7 0.786617
Target:  5'- gGGCGUggacauCCACGcGGuCGCGGACcgCGUCu -3'
miRNA:   3'- -CCGCGu-----GGUGC-UC-GUGCUUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 129307 0.7 0.795833
Target:  5'- cGGCGCcCCGCGccugcGCugGcGCcgCGUCg -3'
miRNA:   3'- -CCGCGuGGUGCu----CGugCuUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 57418 0.7 0.799478
Target:  5'- cGGCcgGCGCCGCGAGCccaggaugcgcacccGCGcGACggCGUCc -3'
miRNA:   3'- -CCG--CGUGGUGCUCG---------------UGC-UUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 73068 0.7 0.804897
Target:  5'- aGGCGCacguguucGCCAgGAGCGCGuagGCGUUG-Cg -3'
miRNA:   3'- -CCGCG--------UGGUgCUCGUGCu--UGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 99341 0.7 0.777259
Target:  5'- cGGCGCGCCcagcagcaGCGcGCACGuGACGagGUCc -3'
miRNA:   3'- -CCGCGUGG--------UGCuCGUGC-UUGUagCAG- -5'
23598 3' -54.2 NC_005261.1 + 3860 0.7 0.813801
Target:  5'- cGGCGCcgcgcgGCCgGCGAGCACGGcgcGCAgcUCGg- -3'
miRNA:   3'- -CCGCG------UGG-UGCUCGUGCU---UGU--AGCag -5'
23598 3' -54.2 NC_005261.1 + 28436 0.7 0.813801
Target:  5'- cGCGCACCGCG-GC-CGGcCAUggCGUCu -3'
miRNA:   3'- cCGCGUGGUGCuCGuGCUuGUA--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 40205 0.7 0.813801
Target:  5'- -uCGUACaGCGAGUACGcgaugAGCGUCGUCg -3'
miRNA:   3'- ccGCGUGgUGCUCGUGC-----UUGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 86874 0.7 0.817315
Target:  5'- gGGCGCggcggccuugGCCGCGcccugguccgcgcgcGGCGCGGACccgCGUCc -3'
miRNA:   3'- -CCGCG----------UGGUGC---------------UCGUGCUUGua-GCAG- -5'
23598 3' -54.2 NC_005261.1 + 31443 0.7 0.777259
Target:  5'- cGGCGcCGCCcgGCGAGgACGAGCGcCGg- -3'
miRNA:   3'- -CCGC-GUGG--UGCUCgUGCUUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 14214 0.7 0.813801
Target:  5'- gGGCGCACCaACGcGCGCGGugaagACcgCGcCg -3'
miRNA:   3'- -CCGCGUGG-UGCuCGUGCU-----UGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 79715 0.7 0.804897
Target:  5'- gGGCGgcuguagcagaCGCCGcCGGGCGCGcGCAUCGa- -3'
miRNA:   3'- -CCGC-----------GUGGU-GCUCGUGCuUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 104163 0.7 0.804897
Target:  5'- cGCGCcguCCGCGGGCGcCGcGCgcggGUCGUCg -3'
miRNA:   3'- cCGCGu--GGUGCUCGU-GCuUG----UAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 95661 0.7 0.804897
Target:  5'- cGGCGcCGCgACGGGCGCGggUGUgagcaCGUg -3'
miRNA:   3'- -CCGC-GUGgUGCUCGUGCuuGUA-----GCAg -5'
23598 3' -54.2 NC_005261.1 + 75304 0.7 0.804897
Target:  5'- cGCGCACCGCGccaccgucggcGGCGCGcggagcccuguGACcuUCGUCg -3'
miRNA:   3'- cCGCGUGGUGC-----------UCGUGC-----------UUGu-AGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.