miRNA display CGI


Results 41 - 60 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 122649 0.73 0.60549
Target:  5'- cGGCGCGCgUACGugGGCGCGAagaGCAucacguUCGUCa -3'
miRNA:   3'- -CCGCGUG-GUGC--UCGUGCU---UGU------AGCAG- -5'
23598 3' -54.2 NC_005261.1 + 128451 0.73 0.619983
Target:  5'- aGCGCGgcggUCGCGAGCACGAcgaGCAgcgagcgcgacauccUCGUCg -3'
miRNA:   3'- cCGCGU----GGUGCUCGUGCU---UGU---------------AGCAG- -5'
23598 3' -54.2 NC_005261.1 + 128714 0.73 0.621019
Target:  5'- aGGCGCGCC-CGGGCcccgcccgcccgcCGAgcugucgGCAUCGUCg -3'
miRNA:   3'- -CCGCGUGGuGCUCGu------------GCU-------UGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 118884 0.73 0.626201
Target:  5'- cGGC-CACCGCGGGCGCGcugguGGCcugCGUCu -3'
miRNA:   3'- -CCGcGUGGUGCUCGUGC-----UUGua-GCAG- -5'
23598 3' -54.2 NC_005261.1 + 88521 0.73 0.626201
Target:  5'- aGCGCuuCCACGuGUACG-ACAUCGUg -3'
miRNA:   3'- cCGCGu-GGUGCuCGUGCuUGUAGCAg -5'
23598 3' -54.2 NC_005261.1 + 15834 0.73 0.626201
Target:  5'- aGGCaccGCAUCGCGAGCGCGcuagagGACGagGUCg -3'
miRNA:   3'- -CCG---CGUGGUGCUCGUGC------UUGUagCAG- -5'
23598 3' -54.2 NC_005261.1 + 77263 0.73 0.636568
Target:  5'- gGGCGCGCuCGCGGGCgGCGucuGCAUUG-Cg -3'
miRNA:   3'- -CCGCGUG-GUGCUCG-UGCu--UGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 28771 0.73 0.636568
Target:  5'- gGGCGCcuggGCCGCG-GCGCGGGCGcUCG-Cg -3'
miRNA:   3'- -CCGCG----UGGUGCuCGUGCUUGU-AGCaG- -5'
23598 3' -54.2 NC_005261.1 + 121124 0.73 0.646932
Target:  5'- gGGCGCGgaggCGCGGGCGCGAGCG-CGa- -3'
miRNA:   3'- -CCGCGUg---GUGCUCGUGCUUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 20861 0.73 0.646932
Target:  5'- cGGCucuuGCGCCGCGGGC-CGGcCAUCGcCa -3'
miRNA:   3'- -CCG----CGUGGUGCUCGuGCUuGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 77157 0.73 0.646932
Target:  5'- cGCGCcgccGCCGCGAG-GCGGGCAUCG-Ca -3'
miRNA:   3'- cCGCG----UGGUGCUCgUGCUUGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 109331 0.73 0.646932
Target:  5'- aGCGCgGCCGCGGGguCGGcgGCcgCGUCg -3'
miRNA:   3'- cCGCG-UGGUGCUCguGCU--UGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 100910 0.73 0.657283
Target:  5'- cGCGCACCGC---CGCGAGCGUCGcCu -3'
miRNA:   3'- cCGCGUGGUGcucGUGCUUGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 55195 0.73 0.657283
Target:  5'- cGGCGCACgGCGuAGCGCGGAUccggCGg- -3'
miRNA:   3'- -CCGCGUGgUGC-UCGUGCUUGua--GCag -5'
23598 3' -54.2 NC_005261.1 + 3356 0.72 0.666582
Target:  5'- cGGCGCgccggccuucaggGCCGCGAGCGCGGccgccaGCcgCGcCg -3'
miRNA:   3'- -CCGCG-------------UGGUGCUCGUGCU------UGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 113895 0.72 0.667614
Target:  5'- cGGCGaCGCgGCGGGCGCGAugGcCGa- -3'
miRNA:   3'- -CCGC-GUGgUGCUCGUGCUugUaGCag -5'
23598 3' -54.2 NC_005261.1 + 48949 0.72 0.667614
Target:  5'- cGGCGC-CCGCcucgguGAGCACGGGCAccUCGcCc -3'
miRNA:   3'- -CCGCGuGGUG------CUCGUGCUUGU--AGCaG- -5'
23598 3' -54.2 NC_005261.1 + 105937 0.72 0.667614
Target:  5'- cGCGCccuCCGCGAGCGCGc-CGUCGa- -3'
miRNA:   3'- cCGCGu--GGUGCUCGUGCuuGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 83757 0.72 0.667614
Target:  5'- cGGCGCGCCACGGccgggucgcagcGCcCGAGCAgCGcCa -3'
miRNA:   3'- -CCGCGUGGUGCU------------CGuGCUUGUaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 102313 0.72 0.671738
Target:  5'- cGCGCGCCGCGgccgcGGCGCGcagccgcgccagcucGGCcgCGUCg -3'
miRNA:   3'- cCGCGUGGUGC-----UCGUGC---------------UUGuaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.