miRNA display CGI


Results 61 - 80 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 99699 0.72 0.676887
Target:  5'- aGGCGCGCCAgcuccgccacgguCGcGCGCGuGGCcgCGUCa -3'
miRNA:   3'- -CCGCGUGGU-------------GCuCGUGC-UUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 111715 0.72 0.677915
Target:  5'- aGGCGCAgUCGCGGGUcgACGAGCG-CGUg -3'
miRNA:   3'- -CCGCGU-GGUGCUCG--UGCUUGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 129589 0.72 0.677915
Target:  5'- cGCGCGCCGCGGGaCACGcGGCAauuUCG-Cg -3'
miRNA:   3'- cCGCGUGGUGCUC-GUGC-UUGU---AGCaG- -5'
23598 3' -54.2 NC_005261.1 + 43716 0.72 0.677915
Target:  5'- cGCGCugCGCGAGCACGcGCGgc-UCu -3'
miRNA:   3'- cCGCGugGUGCUCGUGCuUGUagcAG- -5'
23598 3' -54.2 NC_005261.1 + 60112 0.72 0.688177
Target:  5'- aGCGCGcCCGCGGGCACGuagGCcgCGa- -3'
miRNA:   3'- cCGCGU-GGUGCUCGUGCu--UGuaGCag -5'
23598 3' -54.2 NC_005261.1 + 73963 0.72 0.688177
Target:  5'- gGGCGCGCC-CGGGC-CGucugccuCAUCGUg -3'
miRNA:   3'- -CCGCGUGGuGCUCGuGCuu-----GUAGCAg -5'
23598 3' -54.2 NC_005261.1 + 84556 0.72 0.688177
Target:  5'- gGGCccaGCGCCugGAGCACGGccccguagACGgcCGUCu -3'
miRNA:   3'- -CCG---CGUGGugCUCGUGCU--------UGUa-GCAG- -5'
23598 3' -54.2 NC_005261.1 + 17483 0.72 0.695334
Target:  5'- gGGCGCGCCgggggguccuagacGCgGAGCAUGGGC-UCGUa -3'
miRNA:   3'- -CCGCGUGG--------------UG-CUCGUGCUUGuAGCAg -5'
23598 3' -54.2 NC_005261.1 + 68877 0.72 0.698392
Target:  5'- uGUGCGCCGuCGugcgcuGCGCGGACGcCGUCg -3'
miRNA:   3'- cCGCGUGGU-GCu-----CGUGCUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 85577 0.72 0.698392
Target:  5'- cGGCGCcgcgACCGCGGccucCGCGAGCGUCacgGUCa -3'
miRNA:   3'- -CCGCG----UGGUGCUc---GUGCUUGUAG---CAG- -5'
23598 3' -54.2 NC_005261.1 + 23339 0.72 0.698392
Target:  5'- aGCGCGCgGCGcAGCGCGcGCGU-GUCg -3'
miRNA:   3'- cCGCGUGgUGC-UCGUGCuUGUAgCAG- -5'
23598 3' -54.2 NC_005261.1 + 90066 0.72 0.698392
Target:  5'- cGGCGCcCCGCGGGCGCcgaGGGCAgCGa- -3'
miRNA:   3'- -CCGCGuGGUGCUCGUG---CUUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 53947 0.72 0.698392
Target:  5'- cGGCGCGCCGCGcuCGCGggU-UCGg- -3'
miRNA:   3'- -CCGCGUGGUGCucGUGCuuGuAGCag -5'
23598 3' -54.2 NC_005261.1 + 21257 0.72 0.70855
Target:  5'- gGGCGUGCCgcaACGAGCACGAGgA-CGg- -3'
miRNA:   3'- -CCGCGUGG---UGCUCGUGCUUgUaGCag -5'
23598 3' -54.2 NC_005261.1 + 4160 0.72 0.70855
Target:  5'- aGGCGCGCCAgcugcaggucCGGGCccGCGAGCuUCG-Cg -3'
miRNA:   3'- -CCGCGUGGU----------GCUCG--UGCUUGuAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 131465 0.72 0.70855
Target:  5'- gGGCGCcucccgccuCCGCGAGCGCGc-CGUCGa- -3'
miRNA:   3'- -CCGCGu--------GGUGCUCGUGCuuGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 68048 0.72 0.70855
Target:  5'- cGCGUACUuugucuacGCGGGCACGGugGUCucgGUCg -3'
miRNA:   3'- cCGCGUGG--------UGCUCGUGCUugUAG---CAG- -5'
23598 3' -54.2 NC_005261.1 + 113054 0.72 0.70855
Target:  5'- uGGCGCGCCAcCGcuCGCuGGGCAUCGg- -3'
miRNA:   3'- -CCGCGUGGU-GCucGUG-CUUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 127827 0.71 0.718642
Target:  5'- cGCGCucgcgGCCGCGAGCAgCGGACGgggCGg- -3'
miRNA:   3'- cCGCG-----UGGUGCUCGU-GCUUGUa--GCag -5'
23598 3' -54.2 NC_005261.1 + 120328 0.71 0.728657
Target:  5'- aGGCGCGCUGCGucCcCGAGCG-CGUCu -3'
miRNA:   3'- -CCGCGUGGUGCucGuGCUUGUaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.