miRNA display CGI


Results 81 - 100 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 92203 0.71 0.728657
Target:  5'- uGGCGCAgCCGcCGaAGC-CG-GCGUCGUCg -3'
miRNA:   3'- -CCGCGU-GGU-GC-UCGuGCuUGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 5147 0.71 0.738587
Target:  5'- cGCGCGCCuCG-GCccgGCGGGCcgCGUCg -3'
miRNA:   3'- cCGCGUGGuGCuCG---UGCUUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 44192 0.71 0.738587
Target:  5'- -cCGCGCCAgCGAGCGCGAGCugcaggCGg- -3'
miRNA:   3'- ccGCGUGGU-GCUCGUGCUUGua----GCag -5'
23598 3' -54.2 NC_005261.1 + 102842 0.71 0.738587
Target:  5'- cGcCGCGCCACGuGCugGGccaGCAgcgCGUCc -3'
miRNA:   3'- cC-GCGUGGUGCuCGugCU---UGUa--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 68288 0.71 0.748422
Target:  5'- cGGgGCcccgGCCGCGGGCGCGGACcUCu-- -3'
miRNA:   3'- -CCgCG----UGGUGCUCGUGCUUGuAGcag -5'
23598 3' -54.2 NC_005261.1 + 38871 0.71 0.748422
Target:  5'- uGGCcaaguacacCAUCGCGuGCACGAagACGUCGUCc -3'
miRNA:   3'- -CCGc--------GUGGUGCuCGUGCU--UGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 57837 0.71 0.748422
Target:  5'- cGUGCuCCGCGGGCGCGGGCGgcaaggccUCGg- -3'
miRNA:   3'- cCGCGuGGUGCUCGUGCUUGU--------AGCag -5'
23598 3' -54.2 NC_005261.1 + 82974 0.71 0.748422
Target:  5'- uGGUGCGCguCGAGCACGGAgG-CGg- -3'
miRNA:   3'- -CCGCGUGguGCUCGUGCUUgUaGCag -5'
23598 3' -54.2 NC_005261.1 + 118917 0.71 0.748422
Target:  5'- gGGUccgGCGCCGCGGGCGCGGcGCcgCG-Cg -3'
miRNA:   3'- -CCG---CGUGGUGCUCGUGCU-UGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 57538 0.71 0.748422
Target:  5'- cGGCGCgGCgCACGGGCAC--ACGUCG-Ca -3'
miRNA:   3'- -CCGCG-UG-GUGCUCGUGcuUGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 107037 0.71 0.758152
Target:  5'- gGGCGCGCCACGcGCcGCGuACAcCGcCa -3'
miRNA:   3'- -CCGCGUGGUGCuCG-UGCuUGUaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 106123 0.71 0.758152
Target:  5'- cGGCGCGCgCGCGccGGCAacgcCGGACAUgGUg -3'
miRNA:   3'- -CCGCGUG-GUGC--UCGU----GCUUGUAgCAg -5'
23598 3' -54.2 NC_005261.1 + 119572 0.71 0.758152
Target:  5'- uGGaUGCGCUGCGAGCGCGAGac-CGUg -3'
miRNA:   3'- -CC-GCGUGGUGCUCGUGCUUguaGCAg -5'
23598 3' -54.2 NC_005261.1 + 59147 0.71 0.767767
Target:  5'- cGGCGCGCCcCGGGCGCGcGGCGccCGcCc -3'
miRNA:   3'- -CCGCGUGGuGCUCGUGC-UUGUa-GCaG- -5'
23598 3' -54.2 NC_005261.1 + 123961 0.71 0.767767
Target:  5'- aGCGCccgcuCCGCGAGCGCuacaAACAgCGUCa -3'
miRNA:   3'- cCGCGu----GGUGCUCGUGc---UUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 31443 0.7 0.777259
Target:  5'- cGGCGcCGCCcgGCGAGgACGAGCGcCGg- -3'
miRNA:   3'- -CCGC-GUGG--UGCUCgUGCUUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 99341 0.7 0.777259
Target:  5'- cGGCGCGCCcagcagcaGCGcGCACGuGACGagGUCc -3'
miRNA:   3'- -CCGCGUGG--------UGCuCGUGC-UUGUagCAG- -5'
23598 3' -54.2 NC_005261.1 + 113340 0.7 0.777259
Target:  5'- cGCGCGgCACGGGCuguacaACGcGCAguUCGUCg -3'
miRNA:   3'- cCGCGUgGUGCUCG------UGCuUGU--AGCAG- -5'
23598 3' -54.2 NC_005261.1 + 104059 0.7 0.777259
Target:  5'- aGCGCcucgGCCGCGAGCGCGucCAgcUCGg- -3'
miRNA:   3'- cCGCG----UGGUGCUCGUGCuuGU--AGCag -5'
23598 3' -54.2 NC_005261.1 + 125468 0.7 0.785688
Target:  5'- gGGCGCcgagaaaGCCGCGGGCGCGAAaacuaaAUCc-- -3'
miRNA:   3'- -CCGCG-------UGGUGCUCGUGCUUg-----UAGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.