Results 101 - 120 of 384 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23598 | 3' | -54.2 | NC_005261.1 | + | 125468 | 0.7 | 0.785688 |
Target: 5'- gGGCGCcgagaaaGCCGCGGGCGCGAAaacuaaAUCc-- -3' miRNA: 3'- -CCGCG-------UGGUGCUCGUGCUUg-----UAGcag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 107257 | 0.7 | 0.786617 |
Target: 5'- cGCGgGCgCGCGGGCACGGGCGggCG-Cg -3' miRNA: 3'- cCGCgUG-GUGCUCGUGCUUGUa-GCaG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 119661 | 0.7 | 0.786617 |
Target: 5'- cGCGCGCCugGAGCucUGGuucCAgcgCGUCg -3' miRNA: 3'- cCGCGUGGugCUCGu-GCUu--GUa--GCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 74561 | 0.7 | 0.786617 |
Target: 5'- gGGCGUggacauCCACGcGGuCGCGGACcgCGUCu -3' miRNA: 3'- -CCGCGu-----GGUGC-UC-GUGCUUGuaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 68546 | 0.7 | 0.786617 |
Target: 5'- cGCGCGCCcccugcugcGCGGGCucuuUGAGCG-CGUCg -3' miRNA: 3'- cCGCGUGG---------UGCUCGu---GCUUGUaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 76912 | 0.7 | 0.786617 |
Target: 5'- cGCGCugUGCGuGCugGGccGCcgCGUCg -3' miRNA: 3'- cCGCGugGUGCuCGugCU--UGuaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 82376 | 0.7 | 0.794918 |
Target: 5'- cGCGCGCCGCcAGCGCcgcccagcccgcgGGGcCGUCGUCc -3' miRNA: 3'- cCGCGUGGUGcUCGUG-------------CUU-GUAGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 117965 | 0.7 | 0.794918 |
Target: 5'- gGGCGCgcucgcuGCCAUGGGCGCGcACAcCGg- -3' miRNA: 3'- -CCGCG-------UGGUGCUCGUGCuUGUaGCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 83581 | 0.7 | 0.795833 |
Target: 5'- cGGCGC-CCGCGGcCGCcAGCAgcgCGUCg -3' miRNA: 3'- -CCGCGuGGUGCUcGUGcUUGUa--GCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 129307 | 0.7 | 0.795833 |
Target: 5'- cGGCGCcCCGCGccugcGCugGcGCcgCGUCg -3' miRNA: 3'- -CCGCGuGGUGCu----CGugCuUGuaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 46215 | 0.7 | 0.795833 |
Target: 5'- cGCGCcgcucgaagGCCGCGuGgACGAGCG-CGUCg -3' miRNA: 3'- cCGCG---------UGGUGCuCgUGCUUGUaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 57418 | 0.7 | 0.799478 |
Target: 5'- cGGCcgGCGCCGCGAGCccaggaugcgcacccGCGcGACggCGUCc -3' miRNA: 3'- -CCG--CGUGGUGCUCG---------------UGC-UUGuaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 73068 | 0.7 | 0.804897 |
Target: 5'- aGGCGCacguguucGCCAgGAGCGCGuagGCGUUG-Cg -3' miRNA: 3'- -CCGCG--------UGGUgCUCGUGCu--UGUAGCaG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 104163 | 0.7 | 0.804897 |
Target: 5'- cGCGCcguCCGCGGGCGcCGcGCgcggGUCGUCg -3' miRNA: 3'- cCGCGu--GGUGCUCGU-GCuUG----UAGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 95661 | 0.7 | 0.804897 |
Target: 5'- cGGCGcCGCgACGGGCGCGggUGUgagcaCGUg -3' miRNA: 3'- -CCGC-GUGgUGCUCGUGCuuGUA-----GCAg -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 79715 | 0.7 | 0.804897 |
Target: 5'- gGGCGgcuguagcagaCGCCGcCGGGCGCGcGCAUCGa- -3' miRNA: 3'- -CCGC-----------GUGGU-GCUCGUGCuUGUAGCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 75304 | 0.7 | 0.804897 |
Target: 5'- cGCGCACCGCGccaccgucggcGGCGCGcggagcccuguGACcuUCGUCg -3' miRNA: 3'- cCGCGUGGUGC-----------UCGUGC-----------UUGu-AGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 3860 | 0.7 | 0.813801 |
Target: 5'- cGGCGCcgcgcgGCCgGCGAGCACGGcgcGCAgcUCGg- -3' miRNA: 3'- -CCGCG------UGG-UGCUCGUGCU---UGU--AGCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 104837 | 0.7 | 0.813801 |
Target: 5'- gGGcCGCGCCACGcggaccGCGCGGgucacGCAcgCGUCg -3' miRNA: 3'- -CC-GCGUGGUGCu-----CGUGCU-----UGUa-GCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 100725 | 0.7 | 0.813801 |
Target: 5'- cGGcCGCGCCGCGcGCGCGcGCggCGg- -3' miRNA: 3'- -CC-GCGUGGUGCuCGUGCuUGuaGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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