miRNA display CGI


Results 121 - 140 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 100725 0.7 0.813801
Target:  5'- cGGcCGCGCCGCGcGCGCGcGCggCGg- -3'
miRNA:   3'- -CC-GCGUGGUGCuCGUGCuUGuaGCag -5'
23598 3' -54.2 NC_005261.1 + 104837 0.7 0.813801
Target:  5'- gGGcCGCGCCACGcggaccGCGCGGgucacGCAcgCGUCg -3'
miRNA:   3'- -CC-GCGUGGUGCu-----CGUGCU-----UGUa-GCAG- -5'
23598 3' -54.2 NC_005261.1 + 133032 0.7 0.813801
Target:  5'- gGGCGCGCCAcCGcGCACGcACGUgcugcgcggCGUUg -3'
miRNA:   3'- -CCGCGUGGU-GCuCGUGCuUGUA---------GCAG- -5'
23598 3' -54.2 NC_005261.1 + 3860 0.7 0.813801
Target:  5'- cGGCGCcgcgcgGCCgGCGAGCACGGcgcGCAgcUCGg- -3'
miRNA:   3'- -CCGCG------UGG-UGCUCGUGCU---UGU--AGCag -5'
23598 3' -54.2 NC_005261.1 + 28436 0.7 0.813801
Target:  5'- cGCGCACCGCG-GC-CGGcCAUggCGUCu -3'
miRNA:   3'- cCGCGUGGUGCuCGuGCUuGUA--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 86874 0.7 0.817315
Target:  5'- gGGCGCggcggccuugGCCGCGcccugguccgcgcgcGGCGCGGACccgCGUCc -3'
miRNA:   3'- -CCGCG----------UGGUGC---------------UCGUGCUUGua-GCAG- -5'
23598 3' -54.2 NC_005261.1 + 14823 0.69 0.819933
Target:  5'- cGGCuuauagauGCGCCGgGAGCACGGcagcaggcggcggcGCAUCG-Cg -3'
miRNA:   3'- -CCG--------CGUGGUgCUCGUGCU--------------UGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 76798 0.69 0.822535
Target:  5'- uGGCGC-CgCGCGAGCGCuuccuguACcUCGUCa -3'
miRNA:   3'- -CCGCGuG-GUGCUCGUGcu-----UGuAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 127022 0.69 0.822535
Target:  5'- cGGCG-GCC-CGAGCAgGGA-GUCGUCg -3'
miRNA:   3'- -CCGCgUGGuGCUCGUgCUUgUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 38947 0.69 0.822535
Target:  5'- gGGCGgGCCGCGGcGCGCGGGCugCG-Ca -3'
miRNA:   3'- -CCGCgUGGUGCU-CGUGCUUGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 70473 0.69 0.822535
Target:  5'- -cCGCGCCGCGGGUGCGcGCG-CGUg -3'
miRNA:   3'- ccGCGUGGUGCUCGUGCuUGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 18346 0.69 0.822535
Target:  5'- gGGCGCAgCACGAGCgACGucccgcuaagcGCGUaGUCg -3'
miRNA:   3'- -CCGCGUgGUGCUCG-UGCu----------UGUAgCAG- -5'
23598 3' -54.2 NC_005261.1 + 49934 0.69 0.82598
Target:  5'- aGGCGC-CCGCgGAGCcgcgcaaaaaaggagGCGGcgcCGUCGUCa -3'
miRNA:   3'- -CCGCGuGGUG-CUCG---------------UGCUu--GUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 47042 0.69 0.827691
Target:  5'- cGGCGCuguccagaaagucCCACGGGC-CGAGCG-CGUg -3'
miRNA:   3'- -CCGCGu------------GGUGCUCGuGCUUGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 99542 0.69 0.830244
Target:  5'- gGGCGCGuCCAgGcGGCGCGccaggaaGGCGUCGUa -3'
miRNA:   3'- -CCGCGU-GGUgC-UCGUGC-------UUGUAGCAg -5'
23598 3' -54.2 NC_005261.1 + 75372 0.69 0.830244
Target:  5'- cGGCGUACCugGAcgcccugGCGCGcgcCAUCGa- -3'
miRNA:   3'- -CCGCGUGGugCU-------CGUGCuu-GUAGCag -5'
23598 3' -54.2 NC_005261.1 + 92573 0.69 0.830244
Target:  5'- cGCGCGCCGCGcgcccacGCGCGAGCGcagccgcUCG-Cg -3'
miRNA:   3'- cCGCGUGGUGCu------CGUGCUUGU-------AGCaG- -5'
23598 3' -54.2 NC_005261.1 + 17208 0.69 0.831092
Target:  5'- aGCGCGCC-C-AGCACGGACAgcagCGcCa -3'
miRNA:   3'- cCGCGUGGuGcUCGUGCUUGUa---GCaG- -5'
23598 3' -54.2 NC_005261.1 + 60003 0.69 0.831092
Target:  5'- gGGCaGCGCgACGGGCAgGGACA-CGa- -3'
miRNA:   3'- -CCG-CGUGgUGCUCGUgCUUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 105691 0.69 0.831092
Target:  5'- uGGCGC-CCACGAucaccaGCGCcAGCGaCGUCu -3'
miRNA:   3'- -CCGCGuGGUGCU------CGUGcUUGUaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.