miRNA display CGI


Results 141 - 160 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 2388 0.69 0.831092
Target:  5'- cGGCGCGCUggcgGCGAGCGCGc-CcgCGg- -3'
miRNA:   3'- -CCGCGUGG----UGCUCGUGCuuGuaGCag -5'
23598 3' -54.2 NC_005261.1 + 68761 0.69 0.831092
Target:  5'- cGGgGCGCCGCgGAGCcgccguguCGAACuUCGUg -3'
miRNA:   3'- -CCgCGUGGUG-CUCGu-------GCUUGuAGCAg -5'
23598 3' -54.2 NC_005261.1 + 68678 0.69 0.831092
Target:  5'- cGGCGUccGCCGCGugggggccGGCGCGGACGaCGg- -3'
miRNA:   3'- -CCGCG--UGGUGC--------UCGUGCUUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 105691 0.69 0.831092
Target:  5'- uGGCGC-CCACGAucaccaGCGCcAGCGaCGUCu -3'
miRNA:   3'- -CCGCGuGGUGCU------CGUGcUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 31988 0.69 0.838635
Target:  5'- cGCGCACCGCGGugcccgugccgccGCGCGAguaccgGCAgcgCGUg -3'
miRNA:   3'- cCGCGUGGUGCU-------------CGUGCU------UGUa--GCAg -5'
23598 3' -54.2 NC_005261.1 + 120391 0.69 0.839463
Target:  5'- cGCGCACC--GAGCA-GAGCggCGUCu -3'
miRNA:   3'- cCGCGUGGugCUCGUgCUUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 48106 0.69 0.839463
Target:  5'- cGGUGCugUACGAG-ACGGGCAUgG-Cg -3'
miRNA:   3'- -CCGCGugGUGCUCgUGCUUGUAgCaG- -5'
23598 3' -54.2 NC_005261.1 + 102754 0.69 0.839463
Target:  5'- gGGCGCuuGCCGCGGaCGCGAGCG-CGcCc -3'
miRNA:   3'- -CCGCG--UGGUGCUcGUGCUUGUaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 76556 0.69 0.839463
Target:  5'- cGGCauGgGCgACGAGgGCGAGC-UCGUCc -3'
miRNA:   3'- -CCG--CgUGgUGCUCgUGCUUGuAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 72696 0.69 0.839463
Target:  5'- cGGCGCGCCAgGucCGCcAGCGUCG-Cg -3'
miRNA:   3'- -CCGCGUGGUgCucGUGcUUGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 56449 0.69 0.839463
Target:  5'- cGGCGCACCGCaa-CGCGuaccACAgCGUCa -3'
miRNA:   3'- -CCGCGUGGUGcucGUGCu---UGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 75484 0.69 0.845208
Target:  5'- cGGCGCgggccGCUACGAGCGCGGggcgcuggaggcgcACGcCGUg -3'
miRNA:   3'- -CCGCG-----UGGUGCUCGUGCU--------------UGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 113552 0.69 0.847641
Target:  5'- uGCGCGCgCugGAcCGCGAGCAgugGUCg -3'
miRNA:   3'- cCGCGUG-GugCUcGUGCUUGUag-CAG- -5'
23598 3' -54.2 NC_005261.1 + 132899 0.69 0.847641
Target:  5'- cGgGCGCCGCGGGCGgcgcCGAGCggCGg- -3'
miRNA:   3'- cCgCGUGGUGCUCGU----GCUUGuaGCag -5'
23598 3' -54.2 NC_005261.1 + 93919 0.69 0.847641
Target:  5'- cGGCGC-CCGCGGGCuu--GCGcCGUCc -3'
miRNA:   3'- -CCGCGuGGUGCUCGugcuUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 49870 0.69 0.847641
Target:  5'- aGCGCGCgGCGAGCuccgagaaGAGCAcCGUg -3'
miRNA:   3'- cCGCGUGgUGCUCGug------CUUGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 48812 0.69 0.847641
Target:  5'- cGUGCGCgGCGucCGCGAcgcCGUCGUCg -3'
miRNA:   3'- cCGCGUGgUGCucGUGCUu--GUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 14995 0.69 0.847641
Target:  5'- cGGcCGCGCC-CgGAGCGCGGGaggaggaGUUGUCg -3'
miRNA:   3'- -CC-GCGUGGuG-CUCGUGCUUg------UAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 1726 0.69 0.847641
Target:  5'- cGGCacggGCACCGCGGuGCGCGGGCccaggcgCGUg -3'
miRNA:   3'- -CCG----CGUGGUGCU-CGUGCUUGua-----GCAg -5'
23598 3' -54.2 NC_005261.1 + 54011 0.69 0.847641
Target:  5'- aGGCGcCGCCGCGAGCGCuucgcGCAcgCGcUCc -3'
miRNA:   3'- -CCGC-GUGGUGCUCGUGcu---UGUa-GC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.