miRNA display CGI


Results 61 - 80 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 85662 0.66 0.94338
Target:  5'- cGcCGCAgCACGGGCugGAACugcgCG-Cg -3'
miRNA:   3'- cC-GCGUgGUGCUCGugCUUGua--GCaG- -5'
23598 3' -54.2 NC_005261.1 + 98334 0.66 0.94338
Target:  5'- cGGCGCGCCccgugucgacGCGGGgGCGGGgGUgGg- -3'
miRNA:   3'- -CCGCGUGG----------UGCUCgUGCUUgUAgCag -5'
23598 3' -54.2 NC_005261.1 + 107381 0.66 0.94338
Target:  5'- gGGCGC-CCGCGucCACGAACGg---- -3'
miRNA:   3'- -CCGCGuGGUGCucGUGCUUGUagcag -5'
23598 3' -54.2 NC_005261.1 + 124307 0.66 0.94338
Target:  5'- uGCGCACUACGcGCAgcAGCG-CGUCc -3'
miRNA:   3'- cCGCGUGGUGCuCGUgcUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 125301 0.66 0.94338
Target:  5'- gGGCGCcggacCCGCGGGCGCuccGCGgccucggCGUCc -3'
miRNA:   3'- -CCGCGu----GGUGCUCGUGcu-UGUa------GCAG- -5'
23598 3' -54.2 NC_005261.1 + 133826 0.66 0.94338
Target:  5'- aGGCGCugCGCGGcCGCGugcGCGcCGUg -3'
miRNA:   3'- -CCGCGugGUGCUcGUGCu--UGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 68127 0.66 0.94338
Target:  5'- cGCGgGCCGCG-GCGCGGcgACcgCGcCg -3'
miRNA:   3'- cCGCgUGGUGCuCGUGCU--UGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 84993 0.66 0.94338
Target:  5'- cGGCGCACC-CaGuGCAUGAcggccGCGggGUCg -3'
miRNA:   3'- -CCGCGUGGuG-CuCGUGCU-----UGUagCAG- -5'
23598 3' -54.2 NC_005261.1 + 36951 0.66 0.94292
Target:  5'- uGGCGCaaggcccGCCGCGcGGCGCaGAGC-UCGg- -3'
miRNA:   3'- -CCGCG-------UGGUGC-UCGUG-CUUGuAGCag -5'
23598 3' -54.2 NC_005261.1 + 13045 0.66 0.94292
Target:  5'- gGGCGCgggGCCGCGcGCGCcccugccGGGCG-CGUCc -3'
miRNA:   3'- -CCGCG---UGGUGCuCGUG-------CUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 123425 0.66 0.941994
Target:  5'- gGGCuCGCCACGGGCcgcagccgcagcucGCGcauGACGcCGUCg -3'
miRNA:   3'- -CCGcGUGGUGCUCG--------------UGC---UUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 53013 0.66 0.941994
Target:  5'- cGGCGCAgcucgccagcgcuuCCGCG-GCGCcgGGGCAgcCGUCg -3'
miRNA:   3'- -CCGCGU--------------GGUGCuCGUG--CUUGUa-GCAG- -5'
23598 3' -54.2 NC_005261.1 + 126063 0.66 0.941994
Target:  5'- cGGCGCcaGCCgcccgccggccucgGCGGGCGCGccCAUCuUCg -3'
miRNA:   3'- -CCGCG--UGG--------------UGCUCGUGCuuGUAGcAG- -5'
23598 3' -54.2 NC_005261.1 + 54583 0.66 0.938677
Target:  5'- cGGCcaGCGCCGacuGCGCGGugAgCGUCa -3'
miRNA:   3'- -CCG--CGUGGUgcuCGUGCUugUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 50554 0.66 0.938677
Target:  5'- cGGCGCgcggACCACGGuCACGcGCcuggCGUCc -3'
miRNA:   3'- -CCGCG----UGGUGCUcGUGCuUGua--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 119126 0.66 0.938677
Target:  5'- aGGcCGCgGCCGCG-GCGCGGcCAUC-UCg -3'
miRNA:   3'- -CC-GCG-UGGUGCuCGUGCUuGUAGcAG- -5'
23598 3' -54.2 NC_005261.1 + 97900 0.66 0.938677
Target:  5'- cGGCGgACCGucUGGGCGcCGGGCGUCc-- -3'
miRNA:   3'- -CCGCgUGGU--GCUCGU-GCUUGUAGcag -5'
23598 3' -54.2 NC_005261.1 + 83188 0.66 0.938677
Target:  5'- uGCGCACC-CGcAGCugccGCGuGACGUgGUCg -3'
miRNA:   3'- cCGCGUGGuGC-UCG----UGC-UUGUAgCAG- -5'
23598 3' -54.2 NC_005261.1 + 73482 0.66 0.938677
Target:  5'- gGGcCGCGgCGCGGcGCGCGGACG-CGg- -3'
miRNA:   3'- -CC-GCGUgGUGCU-CGUGCUUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 71979 0.66 0.938677
Target:  5'- aGCGCGCgGCaGGUGCGcAGCGUCGcCc -3'
miRNA:   3'- cCGCGUGgUGcUCGUGC-UUGUAGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.