Results 101 - 120 of 384 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23598 | 3' | -54.2 | NC_005261.1 | + | 86939 | 0.66 | 0.933222 |
Target: 5'- cGCGCGCgGCGGGCugGucaaagaccgugaAGCAcaCGUCc -3' miRNA: 3'- cCGCGUGgUGCUCGugC-------------UUGUa-GCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 106467 | 0.67 | 0.928539 |
Target: 5'- gGGCGU-CCAaGAGCGCcGGGCuccccUCGUCg -3' miRNA: 3'- -CCGCGuGGUgCUCGUG-CUUGu----AGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 124580 | 0.67 | 0.928539 |
Target: 5'- cGCGCACCACGcGCugaucguUGGGCggCGUg -3' miRNA: 3'- cCGCGUGGUGCuCGu------GCUUGuaGCAg -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 5488 | 0.67 | 0.928539 |
Target: 5'- cGCGCGCCGgGggguAGCugGGGCcgCGg- -3' miRNA: 3'- cCGCGUGGUgC----UCGugCUUGuaGCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 20252 | 0.67 | 0.928539 |
Target: 5'- cGCGCuCCAUGGGCGCcgaGAACcgccggGUCGUg -3' miRNA: 3'- cCGCGuGGUGCUCGUG---CUUG------UAGCAg -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 44321 | 0.67 | 0.928539 |
Target: 5'- gGGCGCcgcagacggggGgCugGGGCACGAGguCAUCGa- -3' miRNA: 3'- -CCGCG-----------UgGugCUCGUGCUU--GUAGCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 46568 | 0.67 | 0.928539 |
Target: 5'- aGCGCuGCUGCGAGCGCG-GCcUCG-Cg -3' miRNA: 3'- cCGCG-UGGUGCUCGUGCuUGuAGCaG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 59255 | 0.67 | 0.928539 |
Target: 5'- gGGCGCcggcGCCACGcgucGCACG-GCGU-GUCg -3' miRNA: 3'- -CCGCG----UGGUGCu---CGUGCuUGUAgCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 62202 | 0.67 | 0.928539 |
Target: 5'- uGUGCAgCGCGAggguGCGCGcGGCcgCGUCu -3' miRNA: 3'- cCGCGUgGUGCU----CGUGC-UUGuaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 97755 | 0.67 | 0.928539 |
Target: 5'- gGGCGgGCUcgGCG-GCGCGGccgGCAUCGa- -3' miRNA: 3'- -CCGCgUGG--UGCuCGUGCU---UGUAGCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 94686 | 0.67 | 0.928007 |
Target: 5'- aGGCGCugGCCAccgaggacguggcCGAGCugGAGCGcCGc- -3' miRNA: 3'- -CCGCG--UGGU-------------GCUCGugCUUGUaGCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 116678 | 0.67 | 0.928007 |
Target: 5'- cGGCGCcggcccaAUCGCGAGCGCcucgcuCAUCGg- -3' miRNA: 3'- -CCGCG-------UGGUGCUCGUGcuu---GUAGCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 93692 | 0.67 | 0.926394 |
Target: 5'- cGGgGCGCCgGCGGGUGCcucuuccuccuCGUCGUCg -3' miRNA: 3'- -CCgCGUGG-UGCUCGUGcuu--------GUAGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 55606 | 0.67 | 0.923103 |
Target: 5'- uGCGCuccuCCugGuccagcAGCGCGuccuccGCGUCGUCa -3' miRNA: 3'- cCGCGu---GGugC------UCGUGCu-----UGUAGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 68405 | 0.67 | 0.923103 |
Target: 5'- cGgGUACCACGA-CAcCGAGCGgcgCGUCc -3' miRNA: 3'- cCgCGUGGUGCUcGU-GCUUGUa--GCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 82692 | 0.67 | 0.923103 |
Target: 5'- gGGCGCcaccGCCGCGcucccCACGAGCAggcaGUCc -3' miRNA: 3'- -CCGCG----UGGUGCuc---GUGCUUGUag--CAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 98061 | 0.67 | 0.923103 |
Target: 5'- cGGCGgGaCCGCGGGCGgCGggUGU-GUCc -3' miRNA: 3'- -CCGCgU-GGUGCUCGU-GCuuGUAgCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 135102 | 0.67 | 0.923103 |
Target: 5'- cGGCGgAgCGCGAG-GCGGACcccgCGUCu -3' miRNA: 3'- -CCGCgUgGUGCUCgUGCUUGua--GCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 46491 | 0.67 | 0.923103 |
Target: 5'- cGGCGCccuCCGCgGGGCGC-AGCccggCGUCg -3' miRNA: 3'- -CCGCGu--GGUG-CUCGUGcUUGua--GCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 47624 | 0.67 | 0.923103 |
Target: 5'- gGGCG-GCCGCGGccgccGCGCGcACcgCGUCc -3' miRNA: 3'- -CCGCgUGGUGCU-----CGUGCuUGuaGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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