miRNA display CGI


Results 121 - 140 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 43350 0.67 0.923103
Target:  5'- cGUGUGCCugGGGCugGugccgcugcggcGGCAUCGg- -3'
miRNA:   3'- cCGCGUGGugCUCGugC------------UUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 47624 0.67 0.923103
Target:  5'- gGGCG-GCCGCGGccgccGCGCGcACcgCGUCc -3'
miRNA:   3'- -CCGCgUGGUGCU-----CGUGCuUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 94632 0.67 0.923103
Target:  5'- cGGCGCcgucguCgGCGcGCGCGAACAUgCGg- -3'
miRNA:   3'- -CCGCGu-----GgUGCuCGUGCUUGUA-GCag -5'
23598 3' -54.2 NC_005261.1 + 46491 0.67 0.923103
Target:  5'- cGGCGCccuCCGCgGGGCGC-AGCccggCGUCg -3'
miRNA:   3'- -CCGCGu--GGUG-CUCGUGcUUGua--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 135102 0.67 0.923103
Target:  5'- cGGCGgAgCGCGAG-GCGGACcccgCGUCu -3'
miRNA:   3'- -CCGCgUgGUGCUCgUGCUUGua--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 98061 0.67 0.923103
Target:  5'- cGGCGgGaCCGCGGGCGgCGggUGU-GUCc -3'
miRNA:   3'- -CCGCgU-GGUGCUCGU-GCuuGUAgCAG- -5'
23598 3' -54.2 NC_005261.1 + 82692 0.67 0.923103
Target:  5'- gGGCGCcaccGCCGCGcucccCACGAGCAggcaGUCc -3'
miRNA:   3'- -CCGCG----UGGUGCuc---GUGCUUGUag--CAG- -5'
23598 3' -54.2 NC_005261.1 + 68405 0.67 0.923103
Target:  5'- cGgGUACCACGA-CAcCGAGCGgcgCGUCc -3'
miRNA:   3'- cCgCGUGGUGCUcGU-GCUUGUa--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 55606 0.67 0.923103
Target:  5'- uGCGCuccuCCugGuccagcAGCGCGuccuccGCGUCGUCa -3'
miRNA:   3'- cCGCGu---GGugC------UCGUGCu-----UGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 49455 0.67 0.922546
Target:  5'- cGCGCGCCgcggaagGCGGGCGCGcaGGCcgCG-Cg -3'
miRNA:   3'- cCGCGUGG-------UGCUCGUGC--UUGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 118692 0.67 0.92086
Target:  5'- uGGCGCACgCGCGgcgugguccugcucAGCgucgcggGCGGGCAcggCGUCg -3'
miRNA:   3'- -CCGCGUG-GUGC--------------UCG-------UGCUUGUa--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 55861 0.67 0.917421
Target:  5'- cGGCGCGgaccaaguCCACGAcGCGCGAuugaAgAUCGcCu -3'
miRNA:   3'- -CCGCGU--------GGUGCU-CGUGCU----UgUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 70564 0.67 0.917421
Target:  5'- aGgGCGCCGCGAagagcucggGCGCGAGCGcagcggCGUg -3'
miRNA:   3'- cCgCGUGGUGCU---------CGUGCUUGUa-----GCAg -5'
23598 3' -54.2 NC_005261.1 + 87255 0.67 0.917421
Target:  5'- cGCGC-CCACuuGCACGG---UCGUCg -3'
miRNA:   3'- cCGCGuGGUGcuCGUGCUuguAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 95074 0.67 0.917421
Target:  5'- -aCGC-CCGCGAGCGCGAccGCGaCGg- -3'
miRNA:   3'- ccGCGuGGUGCUCGUGCU--UGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 101306 0.67 0.917421
Target:  5'- uGCGCGCCguuaGCGGGUGCGA--GUCGa- -3'
miRNA:   3'- cCGCGUGG----UGCUCGUGCUugUAGCag -5'
23598 3' -54.2 NC_005261.1 + 32191 0.67 0.917421
Target:  5'- cGGCGCGCgCugGAGCuggcgcccgACGAGCugcCGg- -3'
miRNA:   3'- -CCGCGUG-GugCUCG---------UGCUUGua-GCag -5'
23598 3' -54.2 NC_005261.1 + 53148 0.67 0.917421
Target:  5'- cGCGCGCCGuCGcGC-CGc-CGUCGUCg -3'
miRNA:   3'- cCGCGUGGU-GCuCGuGCuuGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 106747 0.67 0.917421
Target:  5'- cGGCGCcuccgcgcccGCCACGAGCuugccgGCGGccagcccaGCGcCGUCu -3'
miRNA:   3'- -CCGCG----------UGGUGCUCG------UGCU--------UGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 37326 0.67 0.917421
Target:  5'- cGCGguCCugGAGCugGcaGGCAUCu-- -3'
miRNA:   3'- cCGCguGGugCUCGugC--UUGUAGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.