miRNA display CGI


Results 41 - 60 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 20577 0.67 0.923103
Target:  5'- cGGCGC-CgGCG-GCGCGggUGgccuaCGUCg -3'
miRNA:   3'- -CCGCGuGgUGCuCGUGCuuGUa----GCAG- -5'
23598 3' -54.2 NC_005261.1 + 20861 0.73 0.646932
Target:  5'- cGGCucuuGCGCCGCGGGC-CGGcCAUCGcCa -3'
miRNA:   3'- -CCG----CGUGGUGCUCGuGCUuGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 21257 0.72 0.70855
Target:  5'- gGGCGUGCCgcaACGAGCACGAGgA-CGg- -3'
miRNA:   3'- -CCGCGUGG---UGCUCGUGCUUgUaGCag -5'
23598 3' -54.2 NC_005261.1 + 21748 0.67 0.923103
Target:  5'- cGGCugcuGCGCCugGAGCGCGcGCcgggCGa- -3'
miRNA:   3'- -CCG----CGUGGugCUCGUGCuUGua--GCag -5'
23598 3' -54.2 NC_005261.1 + 23174 0.75 0.544071
Target:  5'- aGGCGCGCCGgGGGCgacaGCGAGCG-CGcCg -3'
miRNA:   3'- -CCGCGUGGUgCUCG----UGCUUGUaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 23339 0.72 0.698392
Target:  5'- aGCGCGCgGCGcAGCGCGcGCGU-GUCg -3'
miRNA:   3'- cCGCGUGgUGC-UCGUGCuUGUAgCAG- -5'
23598 3' -54.2 NC_005261.1 + 28436 0.7 0.813801
Target:  5'- cGCGCACCGCG-GC-CGGcCAUggCGUCu -3'
miRNA:   3'- cCGCGUGGUGCuCGuGCUuGUA--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 28771 0.73 0.636568
Target:  5'- gGGCGCcuggGCCGCG-GCGCGGGCGcUCG-Cg -3'
miRNA:   3'- -CCGCG----UGGUGCuCGUGCUUGU-AGCaG- -5'
23598 3' -54.2 NC_005261.1 + 29186 0.68 0.892271
Target:  5'- cGGCGCccucGCCGCGGcgcccGCGCGGGCGcgCGa- -3'
miRNA:   3'- -CCGCG----UGGUGCU-----CGUGCUUGUa-GCag -5'
23598 3' -54.2 NC_005261.1 + 29979 0.74 0.554192
Target:  5'- cGGUGCGCCGCcGGCGCGuccgGCAgcggcgCGUCu -3'
miRNA:   3'- -CCGCGUGGUGcUCGUGCu---UGUa-----GCAG- -5'
23598 3' -54.2 NC_005261.1 + 30085 0.66 0.933731
Target:  5'- cGGCGCACC-CgGAGCGCGuGCucCGg- -3'
miRNA:   3'- -CCGCGUGGuG-CUCGUGCuUGuaGCag -5'
23598 3' -54.2 NC_005261.1 + 30211 0.67 0.923103
Target:  5'- aGGCG-GCCGCGcuggcGGCGCGAACcgUGg- -3'
miRNA:   3'- -CCGCgUGGUGC-----UCGUGCUUGuaGCag -5'
23598 3' -54.2 NC_005261.1 + 30935 0.67 0.911495
Target:  5'- cGGCGCAgCCccuCGGGgGCGGGCcUCGa- -3'
miRNA:   3'- -CCGCGU-GGu--GCUCgUGCUUGuAGCag -5'
23598 3' -54.2 NC_005261.1 + 31314 0.66 0.947841
Target:  5'- cGGgGC-CCGCGGGCGCGcuCGcCGcCa -3'
miRNA:   3'- -CCgCGuGGUGCUCGUGCuuGUaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 31443 0.7 0.777259
Target:  5'- cGGCGcCGCCcgGCGAGgACGAGCGcCGg- -3'
miRNA:   3'- -CCGC-GUGG--UGCUCgUGCUUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 31579 0.69 0.863388
Target:  5'- gGGCGCGCCGgacgUGAGCGCGcucggcgcGCAgggCGUg -3'
miRNA:   3'- -CCGCGUGGU----GCUCGUGCu-------UGUa--GCAg -5'
23598 3' -54.2 NC_005261.1 + 31826 0.66 0.953686
Target:  5'- cGGCGCGCgCugGcGCGCGccgugcuggccucgcGGCG-CGUCu -3'
miRNA:   3'- -CCGCGUG-GugCuCGUGC---------------UUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 31988 0.69 0.838635
Target:  5'- cGCGCACCGCGGugcccgugccgccGCGCGAguaccgGCAgcgCGUg -3'
miRNA:   3'- cCGCGUGGUGCU-------------CGUGCU------UGUa--GCAg -5'
23598 3' -54.2 NC_005261.1 + 32191 0.67 0.917421
Target:  5'- cGGCGCGCgCugGAGCuggcgcccgACGAGCugcCGg- -3'
miRNA:   3'- -CCGCGUG-GugCUCG---------UGCUUGua-GCag -5'
23598 3' -54.2 NC_005261.1 + 32447 0.68 0.898918
Target:  5'- gGGCGCcggcacagucACCccCGGGCACGGAC-UCGg- -3'
miRNA:   3'- -CCGCG----------UGGu-GCUCGUGCUUGuAGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.