miRNA display CGI


Results 61 - 80 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 33495 0.67 0.923103
Target:  5'- cGGgGC-CCGCGAGCACcagGGGCggCGg- -3'
miRNA:   3'- -CCgCGuGGUGCUCGUG---CUUGuaGCag -5'
23598 3' -54.2 NC_005261.1 + 33889 0.67 0.905327
Target:  5'- cGGCGCGUCACcgGGGCGCGcguauaaagcggGGCcgCGUCu -3'
miRNA:   3'- -CCGCGUGGUG--CUCGUGC------------UUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 35462 0.66 0.94338
Target:  5'- aGGCGCGgCGCGcGCGCGuccCGggGUCc -3'
miRNA:   3'- -CCGCGUgGUGCuCGUGCuu-GUagCAG- -5'
23598 3' -54.2 NC_005261.1 + 36951 0.66 0.94292
Target:  5'- uGGCGCaaggcccGCCGCGcGGCGCaGAGC-UCGg- -3'
miRNA:   3'- -CCGCG-------UGGUGC-UCGUG-CUUGuAGCag -5'
23598 3' -54.2 NC_005261.1 + 37326 0.67 0.917421
Target:  5'- cGCGguCCugGAGCugGcaGGCAUCu-- -3'
miRNA:   3'- cCGCguGGugCUCGugC--UUGUAGcag -5'
23598 3' -54.2 NC_005261.1 + 37915 0.76 0.462921
Target:  5'- cGCGCGCCaccgcugcgcgaguACGAGCGCcgGAGCcgCGUCg -3'
miRNA:   3'- cCGCGUGG--------------UGCUCGUG--CUUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 37993 0.68 0.88539
Target:  5'- uGGaCGCGCUACGcGGCGCccgaGGACGUCaagGUCg -3'
miRNA:   3'- -CC-GCGUGGUGC-UCGUG----CUUGUAG---CAG- -5'
23598 3' -54.2 NC_005261.1 + 38871 0.71 0.748422
Target:  5'- uGGCcaaguacacCAUCGCGuGCACGAagACGUCGUCc -3'
miRNA:   3'- -CCGc--------GUGGUGCuCGUGCU--UGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 38947 0.69 0.822535
Target:  5'- gGGCGgGCCGCGGcGCGCGGGCugCG-Ca -3'
miRNA:   3'- -CCGCgUGGUGCU-CGUGCUUGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 39018 0.66 0.933731
Target:  5'- cGCGCAgagcguCCGCGAGCagcuccacGCGGugAUCcgGUCg -3'
miRNA:   3'- cCGCGU------GGUGCUCG--------UGCUugUAG--CAG- -5'
23598 3' -54.2 NC_005261.1 + 39471 0.68 0.892271
Target:  5'- cGGCGCcCCaACGGGCccgccgcggACGAugAUCGcCc -3'
miRNA:   3'- -CCGCGuGG-UGCUCG---------UGCUugUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 40205 0.7 0.813801
Target:  5'- -uCGUACaGCGAGUACGcgaugAGCGUCGUCg -3'
miRNA:   3'- ccGCGUGgUGCUCGUGC-----UUGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 40631 0.69 0.855618
Target:  5'- cGCGgACCACGAuguuggGCACGucCAgCGUCg -3'
miRNA:   3'- cCGCgUGGUGCU------CGUGCuuGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 41071 0.66 0.95605
Target:  5'- cGGCGCgguccGCCGCcAGCccccgccaguCGAccGCGUCGUCc -3'
miRNA:   3'- -CCGCG-----UGGUGcUCGu---------GCU--UGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 41413 0.68 0.898918
Target:  5'- aGCGCGCCACGAcgagucccuugGC-CGAGCAcacuUCG-Ca -3'
miRNA:   3'- cCGCGUGGUGCU-----------CGuGCUUGU----AGCaG- -5'
23598 3' -54.2 NC_005261.1 + 41743 0.66 0.953686
Target:  5'- aGGCGUcuGgcacgacaaacuuguCCACGAGCGCGAgguGCucuucCGUCa -3'
miRNA:   3'- -CCGCG--U---------------GGUGCUCGUGCU---UGua---GCAG- -5'
23598 3' -54.2 NC_005261.1 + 42218 0.66 0.938677
Target:  5'- gGGCGCcccGCCGCGAGCuccgccGCGcGCAgCGcCu -3'
miRNA:   3'- -CCGCG---UGGUGCUCG------UGCuUGUaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 42829 0.69 0.863388
Target:  5'- cGGCcggaGCACCugGgcgauggcagAGUGCGAGCG-CGUCg -3'
miRNA:   3'- -CCG----CGUGGugC----------UCGUGCUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 43098 0.68 0.892271
Target:  5'- cGCGCGCUACGAGgACGuGGCG-CGg- -3'
miRNA:   3'- cCGCGUGGUGCUCgUGC-UUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 43126 0.68 0.889546
Target:  5'- uGGCGCGCCuacacacGCGcGCGCGGccugcgcgccgccgACAUCG-Cg -3'
miRNA:   3'- -CCGCGUGG-------UGCuCGUGCU--------------UGUAGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.