miRNA display CGI


Results 81 - 100 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 43350 0.67 0.923103
Target:  5'- cGUGUGCCugGGGCugGugccgcugcggcGGCAUCGg- -3'
miRNA:   3'- cCGCGUGGugCUCGugC------------UUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 43716 0.72 0.677915
Target:  5'- cGCGCugCGCGAGCACGcGCGgc-UCu -3'
miRNA:   3'- cCGCGugGUGCUCGUGCuUGUagcAG- -5'
23598 3' -54.2 NC_005261.1 + 43818 0.66 0.935738
Target:  5'- gGGCGCGCCcuccguggagaagcuGCucggcGAGgGCGAggacgcggccGCGUCGUCc -3'
miRNA:   3'- -CCGCGUGG---------------UG-----CUCgUGCU----------UGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 44192 0.71 0.738587
Target:  5'- -cCGCGCCAgCGAGCGCGAGCugcaggCGg- -3'
miRNA:   3'- ccGCGUGGU-GCUCGUGCUUGua----GCag -5'
23598 3' -54.2 NC_005261.1 + 44321 0.67 0.928539
Target:  5'- gGGCGCcgcagacggggGgCugGGGCACGAGguCAUCGa- -3'
miRNA:   3'- -CCGCG-----------UgGugCUCGUGCUU--GUAGCag -5'
23598 3' -54.2 NC_005261.1 + 44615 0.66 0.933731
Target:  5'- cGCGCACCAgGAG-GCGuGCAg-GUCg -3'
miRNA:   3'- cCGCGUGGUgCUCgUGCuUGUagCAG- -5'
23598 3' -54.2 NC_005261.1 + 44872 0.66 0.94338
Target:  5'- aGCGcCGCCGCGAGCgccGCGGGgAUgGcCg -3'
miRNA:   3'- cCGC-GUGGUGCUCG---UGCUUgUAgCaG- -5'
23598 3' -54.2 NC_005261.1 + 46215 0.7 0.795833
Target:  5'- cGCGCcgcucgaagGCCGCGuGgACGAGCG-CGUCg -3'
miRNA:   3'- cCGCG---------UGGUGCuCgUGCUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 46491 0.67 0.923103
Target:  5'- cGGCGCccuCCGCgGGGCGC-AGCccggCGUCg -3'
miRNA:   3'- -CCGCGu--GGUG-CUCGUGcUUGua--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 46568 0.67 0.928539
Target:  5'- aGCGCuGCUGCGAGCGCG-GCcUCG-Cg -3'
miRNA:   3'- cCGCG-UGGUGCUCGUGCuUGuAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 46824 0.66 0.938677
Target:  5'- cGCGCGCCAgGcGCGCGuGC-UCGg- -3'
miRNA:   3'- cCGCGUGGUgCuCGUGCuUGuAGCag -5'
23598 3' -54.2 NC_005261.1 + 47042 0.69 0.827691
Target:  5'- cGGCGCuguccagaaagucCCACGGGC-CGAGCG-CGUg -3'
miRNA:   3'- -CCGCGu------------GGUGCUCGuGCUUGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 47289 0.76 0.475235
Target:  5'- cGCGUGCCacuguGCGAGCACGAGCAUgG-Cg -3'
miRNA:   3'- cCGCGUGG-----UGCUCGUGCUUGUAgCaG- -5'
23598 3' -54.2 NC_005261.1 + 47540 0.68 0.898918
Target:  5'- cGGCGUuCC-CGGGCGCGGcgaaguugGCGUgccCGUCg -3'
miRNA:   3'- -CCGCGuGGuGCUCGUGCU--------UGUA---GCAG- -5'
23598 3' -54.2 NC_005261.1 + 47624 0.67 0.923103
Target:  5'- gGGCG-GCCGCGGccgccGCGCGcACcgCGUCc -3'
miRNA:   3'- -CCGCgUGGUGCU-----CGUGCuUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 47671 0.66 0.95605
Target:  5'- cGCaGCGCCgaGCGcAGCACGGccgcccgcggcGCcgCGUCg -3'
miRNA:   3'- cCG-CGUGG--UGC-UCGUGCU-----------UGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 47940 0.75 0.518056
Target:  5'- cGCGCGCCgcgcGCGAGCgcguucacgcugcgcGCGAGCA-CGUCg -3'
miRNA:   3'- cCGCGUGG----UGCUCG---------------UGCUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 48106 0.69 0.839463
Target:  5'- cGGUGCugUACGAG-ACGGGCAUgG-Cg -3'
miRNA:   3'- -CCGCGugGUGCUCgUGCUUGUAgCaG- -5'
23598 3' -54.2 NC_005261.1 + 48812 0.69 0.847641
Target:  5'- cGUGCGCgGCGucCGCGAcgcCGUCGUCg -3'
miRNA:   3'- cCGCGUGgUGCucGUGCUu--GUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 48949 0.72 0.667614
Target:  5'- cGGCGC-CCGCcucgguGAGCACGGGCAccUCGcCc -3'
miRNA:   3'- -CCGCGuGGUG------CUCGUGCUUGU--AGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.