miRNA display CGI


Results 101 - 120 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 49455 0.67 0.922546
Target:  5'- cGCGCGCCgcggaagGCGGGCGCGcaGGCcgCG-Cg -3'
miRNA:   3'- cCGCGUGG-------UGCUCGUGC--UUGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 49686 0.66 0.94338
Target:  5'- gGGCcgugGC-CCAUGGGCuugacguagGCGAACAUCG-Cg -3'
miRNA:   3'- -CCG----CGuGGUGCUCG---------UGCUUGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 49870 0.69 0.847641
Target:  5'- aGCGCGCgGCGAGCuccgagaaGAGCAcCGUg -3'
miRNA:   3'- cCGCGUGgUGCUCGug------CUUGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 49934 0.69 0.82598
Target:  5'- aGGCGC-CCGCgGAGCcgcgcaaaaaaggagGCGGcgcCGUCGUCa -3'
miRNA:   3'- -CCGCGuGGUG-CUCG---------------UGCUu--GUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 50554 0.66 0.938677
Target:  5'- cGGCGCgcggACCACGGuCACGcGCcuggCGUCc -3'
miRNA:   3'- -CCGCG----UGGUGCUcGUGCuUGua--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 50830 0.68 0.88817
Target:  5'- cGGCuugGCGCCGCGAGCugGcGCcuguggcucgcccagGUCGg- -3'
miRNA:   3'- -CCG---CGUGGUGCUCGugCuUG---------------UAGCag -5'
23598 3' -54.2 NC_005261.1 + 51897 0.68 0.891593
Target:  5'- cGGCGCGCUAcaucgccCGGGCGCGcAGCGgccgCGg- -3'
miRNA:   3'- -CCGCGUGGU-------GCUCGUGC-UUGUa---GCag -5'
23598 3' -54.2 NC_005261.1 + 52624 0.66 0.952063
Target:  5'- cGGCGCcuUCGCGcGGUACGGuACA-CGUCu -3'
miRNA:   3'- -CCGCGu-GGUGC-UCGUGCU-UGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 52802 0.66 0.95605
Target:  5'- uGCGUGCCGCGGGUugGcaAACAggggCGcuUCg -3'
miRNA:   3'- cCGCGUGGUGCUCGugC--UUGUa---GC--AG- -5'
23598 3' -54.2 NC_005261.1 + 53013 0.66 0.941994
Target:  5'- cGGCGCAgcucgccagcgcuuCCGCG-GCGCcgGGGCAgcCGUCg -3'
miRNA:   3'- -CCGCGU--------------GGUGCuCGUG--CUUGUa-GCAG- -5'
23598 3' -54.2 NC_005261.1 + 53148 0.67 0.917421
Target:  5'- cGCGCGCCGuCGcGC-CGc-CGUCGUCg -3'
miRNA:   3'- cCGCGUGGU-GCuCGuGCuuGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 53385 0.66 0.933731
Target:  5'- cGGUGuCAaacacaaaCACGGGCcCGAGC-UCGUCu -3'
miRNA:   3'- -CCGC-GUg-------GUGCUCGuGCUUGuAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 53731 0.74 0.58383
Target:  5'- cGGCGCGCCcgcacggGCGAGCACGugccgGACGUaCGcCg -3'
miRNA:   3'- -CCGCGUGG-------UGCUCGUGC-----UUGUA-GCaG- -5'
23598 3' -54.2 NC_005261.1 + 53947 0.72 0.698392
Target:  5'- cGGCGCGCCGCGcuCGCGggU-UCGg- -3'
miRNA:   3'- -CCGCGUGGUGCucGUGCuuGuAGCag -5'
23598 3' -54.2 NC_005261.1 + 54011 0.69 0.847641
Target:  5'- aGGCGcCGCCGCGAGCGCuucgcGCAcgCGcUCc -3'
miRNA:   3'- -CCGC-GUGGUGCUCGUGcu---UGUa-GC-AG- -5'
23598 3' -54.2 NC_005261.1 + 54328 0.67 0.917421
Target:  5'- aGGCGUGgC-CGAGCGCGuACAg-GUCg -3'
miRNA:   3'- -CCGCGUgGuGCUCGUGCuUGUagCAG- -5'
23598 3' -54.2 NC_005261.1 + 54583 0.66 0.938677
Target:  5'- cGGCcaGCGCCGacuGCGCGGugAgCGUCa -3'
miRNA:   3'- -CCG--CGUGGUgcuCGUGCUugUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 54911 0.74 0.574592
Target:  5'- aGCGCGCguaGCGAGCacucgcccGCGAGCAgCGUCa -3'
miRNA:   3'- cCGCGUGg--UGCUCG--------UGCUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 55195 0.73 0.657283
Target:  5'- cGGCGCACgGCGuAGCGCGGAUccggCGg- -3'
miRNA:   3'- -CCGCGUGgUGC-UCGUGCUUGua--GCag -5'
23598 3' -54.2 NC_005261.1 + 55430 0.79 0.342269
Target:  5'- uGGCGcCACCGCGAGCccucCGAGCggcgcggugggccaGUCGUCg -3'
miRNA:   3'- -CCGC-GUGGUGCUCGu---GCUUG--------------UAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.