miRNA display CGI


Results 121 - 140 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 55499 0.79 0.31441
Target:  5'- cGGCGCGCuCugGAGCagccacuggGCGAGCAggcuuUCGUCg -3'
miRNA:   3'- -CCGCGUG-GugCUCG---------UGCUUGU-----AGCAG- -5'
23598 3' -54.2 NC_005261.1 + 55606 0.67 0.923103
Target:  5'- uGCGCuccuCCugGuccagcAGCGCGuccuccGCGUCGUCa -3'
miRNA:   3'- cCGCGu---GGugC------UCGUGCu-----UGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 55861 0.67 0.917421
Target:  5'- cGGCGCGgaccaaguCCACGAcGCGCGAuugaAgAUCGcCu -3'
miRNA:   3'- -CCGCGU--------GGUGCU-CGUGCU----UgUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 55960 0.69 0.863388
Target:  5'- cGGCGCcgggucucCCGCGAGCGCcgcCGUCGcCa -3'
miRNA:   3'- -CCGCGu-------GGUGCUCGUGcuuGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 56449 0.69 0.839463
Target:  5'- cGGCGCACCGCaa-CGCGuaccACAgCGUCa -3'
miRNA:   3'- -CCGCGUGGUGcucGUGCu---UGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 56605 0.66 0.95605
Target:  5'- cGCGCGCCA--AGCGCGcGCG-CGUg -3'
miRNA:   3'- cCGCGUGGUgcUCGUGCuUGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 57040 0.68 0.870943
Target:  5'- cGGCGC-CCGC-AGCACGA---UCGUg -3'
miRNA:   3'- -CCGCGuGGUGcUCGUGCUuguAGCAg -5'
23598 3' -54.2 NC_005261.1 + 57418 0.7 0.799478
Target:  5'- cGGCcgGCGCCGCGAGCccaggaugcgcacccGCGcGACggCGUCc -3'
miRNA:   3'- -CCG--CGUGGUGCUCG---------------UGC-UUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 57538 0.71 0.748422
Target:  5'- cGGCGCgGCgCACGGGCAC--ACGUCG-Ca -3'
miRNA:   3'- -CCGCG-UG-GUGCUCGUGcuUGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 57837 0.71 0.748422
Target:  5'- cGUGCuCCGCGGGCGCGGGCGgcaaggccUCGg- -3'
miRNA:   3'- cCGCGuGGUGCUCGUGCUUGU--------AGCag -5'
23598 3' -54.2 NC_005261.1 + 57887 0.66 0.952063
Target:  5'- cGGC-CGgCACGGGgACGGccACcgCGUCg -3'
miRNA:   3'- -CCGcGUgGUGCUCgUGCU--UGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 58104 0.66 0.938677
Target:  5'- gGGCgGCACCagccgcGCGAGCAgccugcCGAGCGUgGcCa -3'
miRNA:   3'- -CCG-CGUGG------UGCUCGU------GCUUGUAgCaG- -5'
23598 3' -54.2 NC_005261.1 + 58292 0.67 0.905327
Target:  5'- cGGCGCGCCgGgGGGCGCGGGgAgggggCGg- -3'
miRNA:   3'- -CCGCGUGG-UgCUCGUGCUUgUa----GCag -5'
23598 3' -54.2 NC_005261.1 + 58560 0.69 0.85483
Target:  5'- uGCGCcgucgugGCCGCGAGCgGCGAGCG-CGa- -3'
miRNA:   3'- cCGCG-------UGGUGCUCG-UGCUUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 59147 0.71 0.767767
Target:  5'- cGGCGCGCCcCGGGCGCGcGGCGccCGcCc -3'
miRNA:   3'- -CCGCGUGGuGCUCGUGC-UUGUa-GCaG- -5'
23598 3' -54.2 NC_005261.1 + 59255 0.67 0.928539
Target:  5'- gGGCGCcggcGCCACGcgucGCACG-GCGU-GUCg -3'
miRNA:   3'- -CCGCG----UGGUGCu---CGUGCuUGUAgCAG- -5'
23598 3' -54.2 NC_005261.1 + 60003 0.69 0.831092
Target:  5'- gGGCaGCGCgACGGGCAgGGACA-CGa- -3'
miRNA:   3'- -CCG-CGUGgUGCUCGUgCUUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 60112 0.72 0.688177
Target:  5'- aGCGCGcCCGCGGGCACGuagGCcgCGa- -3'
miRNA:   3'- cCGCGU-GGUGCUCGUGCu--UGuaGCag -5'
23598 3' -54.2 NC_005261.1 + 61929 0.68 0.870943
Target:  5'- aGGUGCacaccuucGCCACgGGGCGCGcgccGACcgCGUCc -3'
miRNA:   3'- -CCGCG--------UGGUG-CUCGUGC----UUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 62202 0.67 0.928539
Target:  5'- uGUGCAgCGCGAggguGCGCGcGGCcgCGUCu -3'
miRNA:   3'- cCGCGUgGUGCU----CGUGC-UUGuaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.