miRNA display CGI


Results 61 - 80 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 118222 0.66 0.933731
Target:  5'- gGGCGCugacgGCCGCGGcCGCGGccuACGcCGUCu -3'
miRNA:   3'- -CCGCG-----UGGUGCUcGUGCU---UGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 117965 0.7 0.794918
Target:  5'- gGGCGCgcucgcuGCCAUGGGCGCGcACAcCGg- -3'
miRNA:   3'- -CCGCG-------UGGUGCUCGUGCuUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 116678 0.67 0.928007
Target:  5'- cGGCGCcggcccaAUCGCGAGCGCcucgcuCAUCGg- -3'
miRNA:   3'- -CCGCG-------UGGUGCUCGUGcuu---GUAGCag -5'
23598 3' -54.2 NC_005261.1 + 116392 0.67 0.90967
Target:  5'- cGGgGgGCCGCGuGCACGcgcacccgcuuauaGGCGUCGg- -3'
miRNA:   3'- -CCgCgUGGUGCuCGUGC--------------UUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 115516 0.67 0.911495
Target:  5'- -cCGCACCAccugcugcacCGAGCGC-AGCAUCGg- -3'
miRNA:   3'- ccGCGUGGU----------GCUCGUGcUUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 115116 0.67 0.911495
Target:  5'- cGGCGCugcCCACGGcGCccACGAugGU-GUCg -3'
miRNA:   3'- -CCGCGu--GGUGCU-CG--UGCUugUAgCAG- -5'
23598 3' -54.2 NC_005261.1 + 113895 0.72 0.667614
Target:  5'- cGGCGaCGCgGCGGGCGCGAugGcCGa- -3'
miRNA:   3'- -CCGC-GUGgUGCUCGUGCUugUaGCag -5'
23598 3' -54.2 NC_005261.1 + 113552 0.69 0.847641
Target:  5'- uGCGCGCgCugGAcCGCGAGCAgugGUCg -3'
miRNA:   3'- cCGCGUG-GugCUcGUGCUUGUag-CAG- -5'
23598 3' -54.2 NC_005261.1 + 113340 0.7 0.777259
Target:  5'- cGCGCGgCACGGGCuguacaACGcGCAguUCGUCg -3'
miRNA:   3'- cCGCGUgGUGCUCG------UGCuUGU--AGCAG- -5'
23598 3' -54.2 NC_005261.1 + 113054 0.72 0.70855
Target:  5'- uGGCGCGCCAcCGcuCGCuGGGCAUCGg- -3'
miRNA:   3'- -CCGCGUGGU-GCucGUG-CUUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 112671 0.66 0.938677
Target:  5'- --aGCGgCugGAGCGCGAGgGgcugggCGUCg -3'
miRNA:   3'- ccgCGUgGugCUCGUGCUUgUa-----GCAG- -5'
23598 3' -54.2 NC_005261.1 + 111715 0.72 0.677915
Target:  5'- aGGCGCAgUCGCGGGUcgACGAGCG-CGUg -3'
miRNA:   3'- -CCGCGU-GGUGCUCG--UGCUUGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 111668 0.66 0.95605
Target:  5'- -cCGCGCCGCGguGGCGgCGuACGUCGg- -3'
miRNA:   3'- ccGCGUGGUGC--UCGU-GCuUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 110677 0.74 0.581775
Target:  5'- cGCaGCGCCugGAGCACGAgggcuuccgcgcccACGUggcCGUCa -3'
miRNA:   3'- cCG-CGUGGugCUCGUGCU--------------UGUA---GCAG- -5'
23598 3' -54.2 NC_005261.1 + 110300 0.67 0.911495
Target:  5'- gGGCGCcugcGCCGcCGAGUACGGcaACcgCGcCg -3'
miRNA:   3'- -CCGCG----UGGU-GCUCGUGCU--UGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 109331 0.73 0.646932
Target:  5'- aGCGCgGCCGCGGGguCGGcgGCcgCGUCg -3'
miRNA:   3'- cCGCG-UGGUGCUCguGCU--UGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 108763 0.68 0.898918
Target:  5'- cGGCGCGCCGCGccacGGCACcauGGGCAcCuUCc -3'
miRNA:   3'- -CCGCGUGGUGC----UCGUG---CUUGUaGcAG- -5'
23598 3' -54.2 NC_005261.1 + 108419 0.69 0.855618
Target:  5'- cGCGC-CUGCGuGCACGGcaACcgCGUCc -3'
miRNA:   3'- cCGCGuGGUGCuCGUGCU--UGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 108038 0.66 0.952063
Target:  5'- cGCGUAgUACGGGUgcagguuuGCGAugGUgGUCg -3'
miRNA:   3'- cCGCGUgGUGCUCG--------UGCUugUAgCAG- -5'
23598 3' -54.2 NC_005261.1 + 107682 0.66 0.947841
Target:  5'- gGGCGUugccGCCGCGGcgggggcgccGC-CGAACGUCGc- -3'
miRNA:   3'- -CCGCG----UGGUGCU----------CGuGCUUGUAGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.