miRNA display CGI


Results 81 - 100 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 107381 0.66 0.94338
Target:  5'- gGGCGC-CCGCGucCACGAACGg---- -3'
miRNA:   3'- -CCGCGuGGUGCucGUGCUUGUagcag -5'
23598 3' -54.2 NC_005261.1 + 107257 0.7 0.786617
Target:  5'- cGCGgGCgCGCGGGCACGGGCGggCG-Cg -3'
miRNA:   3'- cCGCgUG-GUGCUCGUGCUUGUa-GCaG- -5'
23598 3' -54.2 NC_005261.1 + 107037 0.71 0.758152
Target:  5'- gGGCGCGCCACGcGCcGCGuACAcCGcCa -3'
miRNA:   3'- -CCGCGUGGUGCuCG-UGCuUGUaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 106961 0.66 0.947841
Target:  5'- gGGCGCGCUccgccucgGCGcGCGCGccgcGCAccgCGUCg -3'
miRNA:   3'- -CCGCGUGG--------UGCuCGUGCu---UGUa--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 106871 0.67 0.913895
Target:  5'- gGGCGU-CCGCGgccucgcacuccugcAGCGCcuGCGUCGUCc -3'
miRNA:   3'- -CCGCGuGGUGC---------------UCGUGcuUGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 106819 0.68 0.878279
Target:  5'- uGGCcCGCCAgcAGCGCGuggugcGCGUCGUCc -3'
miRNA:   3'- -CCGcGUGGUgcUCGUGCu-----UGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 106747 0.67 0.917421
Target:  5'- cGGCGCcuccgcgcccGCCACGAGCuugccgGCGGccagcccaGCGcCGUCu -3'
miRNA:   3'- -CCGCG----------UGGUGCUCG------UGCU--------UGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 106681 0.66 0.95605
Target:  5'- cGCGCGCC-CGAGggcCGCGccGAUcgCGUCc -3'
miRNA:   3'- cCGCGUGGuGCUC---GUGC--UUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 106584 0.66 0.933222
Target:  5'- gGGC-CGCCGCGcGGCGCuccuccuGGACcUCGUCc -3'
miRNA:   3'- -CCGcGUGGUGC-UCGUG-------CUUGuAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 106467 0.67 0.928539
Target:  5'- gGGCGU-CCAaGAGCGCcGGGCuccccUCGUCg -3'
miRNA:   3'- -CCGCGuGGUgCUCGUG-CUUGu----AGCAG- -5'
23598 3' -54.2 NC_005261.1 + 106123 0.71 0.758152
Target:  5'- cGGCGCGCgCGCGccGGCAacgcCGGACAUgGUg -3'
miRNA:   3'- -CCGCGUG-GUGC--UCGU----GCUUGUAgCAg -5'
23598 3' -54.2 NC_005261.1 + 105937 0.72 0.667614
Target:  5'- cGCGCccuCCGCGAGCGCGc-CGUCGa- -3'
miRNA:   3'- cCGCGu--GGUGCUCGUGCuuGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 105691 0.69 0.831092
Target:  5'- uGGCGC-CCACGAucaccaGCGCcAGCGaCGUCu -3'
miRNA:   3'- -CCGCGuGGUGCU------CGUGcUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 105281 0.68 0.88539
Target:  5'- cGGCaGCGCCgGCGAGCcCGGGCGcgCGa- -3'
miRNA:   3'- -CCG-CGUGG-UGCUCGuGCUUGUa-GCag -5'
23598 3' -54.2 NC_005261.1 + 105127 0.69 0.863388
Target:  5'- gGGCGCggGCCGCcGGCGCGcGCAg-GUCc -3'
miRNA:   3'- -CCGCG--UGGUGcUCGUGCuUGUagCAG- -5'
23598 3' -54.2 NC_005261.1 + 104837 0.7 0.813801
Target:  5'- gGGcCGCGCCACGcggaccGCGCGGgucacGCAcgCGUCg -3'
miRNA:   3'- -CC-GCGUGGUGCu-----CGUGCU-----UGUa-GCAG- -5'
23598 3' -54.2 NC_005261.1 + 104398 0.66 0.947841
Target:  5'- aGGCGCGCCAUaaAGCGCGccgaAACggCGcCg -3'
miRNA:   3'- -CCGCGUGGUGc-UCGUGC----UUGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 104307 0.66 0.947841
Target:  5'- cGCGCGCUcaaaGAGCgcGCGGACGcgcgCGUCc -3'
miRNA:   3'- cCGCGUGGug--CUCG--UGCUUGUa---GCAG- -5'
23598 3' -54.2 NC_005261.1 + 104163 0.7 0.804897
Target:  5'- cGCGCcguCCGCGGGCGcCGcGCgcggGUCGUCg -3'
miRNA:   3'- cCGCGu--GGUGCUCGU-GCuUG----UAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 104059 0.7 0.777259
Target:  5'- aGCGCcucgGCCGCGAGCGCGucCAgcUCGg- -3'
miRNA:   3'- cCGCG----UGGUGCUCGUGCuuGU--AGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.