miRNA display CGI


Results 101 - 120 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 103893 0.66 0.935738
Target:  5'- cGGCGCGCCAagcCGGGCcacccgcgccgccagGuCGGGCGcggCGUCu -3'
miRNA:   3'- -CCGCGUGGU---GCUCG---------------U-GCUUGUa--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 102842 0.71 0.738587
Target:  5'- cGcCGCGCCACGuGCugGGccaGCAgcgCGUCc -3'
miRNA:   3'- cC-GCGUGGUGCuCGugCU---UGUa--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 102754 0.69 0.839463
Target:  5'- gGGCGCuuGCCGCGGaCGCGAGCG-CGcCc -3'
miRNA:   3'- -CCGCG--UGGUGCUcGUGCUUGUaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 102313 0.72 0.671738
Target:  5'- cGCGCGCCGCGgccgcGGCGCGcagccgcgccagcucGGCcgCGUCg -3'
miRNA:   3'- cCGCGUGGUGC-----UCGUGC---------------UUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 102009 0.66 0.952063
Target:  5'- uGGCGCagcucgccgccGCC-CGAGgcCGCGAACGUCa-- -3'
miRNA:   3'- -CCGCG-----------UGGuGCUC--GUGCUUGUAGcag -5'
23598 3' -54.2 NC_005261.1 + 101306 0.67 0.917421
Target:  5'- uGCGCGCCguuaGCGGGUGCGA--GUCGa- -3'
miRNA:   3'- cCGCGUGG----UGCUCGUGCUugUAGCag -5'
23598 3' -54.2 NC_005261.1 + 100910 0.73 0.657283
Target:  5'- cGCGCACCGC---CGCGAGCGUCGcCu -3'
miRNA:   3'- cCGCGUGGUGcucGUGCUUGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 100749 0.68 0.88539
Target:  5'- nGGCGCGCggCACGAGCuuGAaguagGCcUCGUa -3'
miRNA:   3'- -CCGCGUG--GUGCUCGugCU-----UGuAGCAg -5'
23598 3' -54.2 NC_005261.1 + 100725 0.7 0.813801
Target:  5'- cGGcCGCGCCGCGcGCGCGcGCggCGg- -3'
miRNA:   3'- -CC-GCGUGGUGCuCGUGCuUGuaGCag -5'
23598 3' -54.2 NC_005261.1 + 100512 0.68 0.870197
Target:  5'- cGGCGUccagguaGCCGCGcGGCGCcAGCG-CGUCg -3'
miRNA:   3'- -CCGCG-------UGGUGC-UCGUGcUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 100011 0.78 0.393684
Target:  5'- aGGCGC-CCAUGAGCGCGGccacgACAagGUCc -3'
miRNA:   3'- -CCGCGuGGUGCUCGUGCU-----UGUagCAG- -5'
23598 3' -54.2 NC_005261.1 + 99869 0.68 0.878279
Target:  5'- cGCGCGCCGCcgccgcucGGCGCGAggGCGUUGa- -3'
miRNA:   3'- cCGCGUGGUGc-------UCGUGCU--UGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 99699 0.72 0.676887
Target:  5'- aGGCGCGCCAgcuccgccacgguCGcGCGCGuGGCcgCGUCa -3'
miRNA:   3'- -CCGCGUGGU-------------GCuCGUGC-UUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 99655 0.68 0.892271
Target:  5'- uGCGCGCC---AGCACGcugacCGUCGUCa -3'
miRNA:   3'- cCGCGUGGugcUCGUGCuu---GUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 99588 0.84 0.174639
Target:  5'- uGCGCGCCcaGCGAGUccaccGCGAGCGUCGUCc -3'
miRNA:   3'- cCGCGUGG--UGCUCG-----UGCUUGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 99542 0.69 0.830244
Target:  5'- gGGCGCGuCCAgGcGGCGCGccaggaaGGCGUCGUa -3'
miRNA:   3'- -CCGCGU-GGUgC-UCGUGC-------UUGUAGCAg -5'
23598 3' -54.2 NC_005261.1 + 99407 0.67 0.905327
Target:  5'- cGGCuGC-CgCACGAGCGUGAACGUCa-- -3'
miRNA:   3'- -CCG-CGuG-GUGCUCGUGCUUGUAGcag -5'
23598 3' -54.2 NC_005261.1 + 99341 0.7 0.777259
Target:  5'- cGGCGCGCCcagcagcaGCGcGCACGuGACGagGUCc -3'
miRNA:   3'- -CCGCGUGG--------UGCuCGUGC-UUGUagCAG- -5'
23598 3' -54.2 NC_005261.1 + 98732 0.66 0.95605
Target:  5'- gGGgGCA-CGCGGccGCGCGGGCGUUGg- -3'
miRNA:   3'- -CCgCGUgGUGCU--CGUGCUUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 98334 0.66 0.94338
Target:  5'- cGGCGCGCCccgugucgacGCGGGgGCGGGgGUgGg- -3'
miRNA:   3'- -CCGCGUGG----------UGCUCgUGCUUgUAgCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.