miRNA display CGI


Results 121 - 140 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 98212 0.77 0.419866
Target:  5'- gGGCGcCGCCACGgcAGCGCGGcggGCAUCGa- -3'
miRNA:   3'- -CCGC-GUGGUGC--UCGUGCU---UGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 98061 0.67 0.923103
Target:  5'- cGGCGgGaCCGCGGGCGgCGggUGU-GUCc -3'
miRNA:   3'- -CCGCgU-GGUGCUCGU-GCuuGUAgCAG- -5'
23598 3' -54.2 NC_005261.1 + 97900 0.66 0.938677
Target:  5'- cGGCGgACCGucUGGGCGcCGGGCGUCc-- -3'
miRNA:   3'- -CCGCgUGGU--GCUCGU-GCUUGUAGcag -5'
23598 3' -54.2 NC_005261.1 + 97852 0.76 0.456359
Target:  5'- gGGCGcCGCCGCGgcAGCGCGGccgGCAUCGa- -3'
miRNA:   3'- -CCGC-GUGGUGC--UCGUGCU---UGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 97755 0.67 0.928539
Target:  5'- gGGCGgGCUcgGCG-GCGCGGccgGCAUCGa- -3'
miRNA:   3'- -CCGCgUGG--UGCuCGUGCU---UGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 97399 0.69 0.863388
Target:  5'- cGCGCcuGCCGCGGGCuugGCGGGCG-CGcCg -3'
miRNA:   3'- cCGCG--UGGUGCUCG---UGCUUGUaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 97058 0.74 0.584859
Target:  5'- cGGgGgGCgGCGGGCACGAuCcgCGUCg -3'
miRNA:   3'- -CCgCgUGgUGCUCGUGCUuGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 96595 0.66 0.947841
Target:  5'- cGGCGCucuGCCGC-AGCACGucGCG-CGUg -3'
miRNA:   3'- -CCGCG---UGGUGcUCGUGCu-UGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 95661 0.7 0.804897
Target:  5'- cGGCGcCGCgACGGGCGCGggUGUgagcaCGUg -3'
miRNA:   3'- -CCGC-GUGgUGCUCGUGCuuGUA-----GCAg -5'
23598 3' -54.2 NC_005261.1 + 95390 0.66 0.952063
Target:  5'- cGGCGCGCCGCu--CGCGGcCAUCa-- -3'
miRNA:   3'- -CCGCGUGGUGcucGUGCUuGUAGcag -5'
23598 3' -54.2 NC_005261.1 + 95074 0.67 0.917421
Target:  5'- -aCGC-CCGCGAGCGCGAccGCGaCGg- -3'
miRNA:   3'- ccGCGuGGUGCUCGUGCU--UGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 94686 0.67 0.928007
Target:  5'- aGGCGCugGCCAccgaggacguggcCGAGCugGAGCGcCGc- -3'
miRNA:   3'- -CCGCG--UGGU-------------GCUCGugCUUGUaGCag -5'
23598 3' -54.2 NC_005261.1 + 94632 0.67 0.923103
Target:  5'- cGGCGCcgucguCgGCGcGCGCGAACAUgCGg- -3'
miRNA:   3'- -CCGCGu-----GgUGCuCGUGCUUGUA-GCag -5'
23598 3' -54.2 NC_005261.1 + 94267 0.69 0.855618
Target:  5'- gGGCgGCGCCGCGAggcucuugGCGCaGAGCAUggcguaGUCg -3'
miRNA:   3'- -CCG-CGUGGUGCU--------CGUG-CUUGUAg-----CAG- -5'
23598 3' -54.2 NC_005261.1 + 93919 0.69 0.847641
Target:  5'- cGGCGC-CCGCGGGCuu--GCGcCGUCc -3'
miRNA:   3'- -CCGCGuGGUGCUCGugcuUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 93757 0.68 0.892271
Target:  5'- cGGCgGC-CCGCGcGCGCGcGGCGUCG-Ca -3'
miRNA:   3'- -CCG-CGuGGUGCuCGUGC-UUGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 93692 0.67 0.926394
Target:  5'- cGGgGCGCCgGCGGGUGCcucuuccuccuCGUCGUCg -3'
miRNA:   3'- -CCgCGUGG-UGCUCGUGcuu--------GUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 93480 0.68 0.88539
Target:  5'- gGGCGCGcgucgcCCGCGGcgaagcGCGCGAACcgCGg- -3'
miRNA:   3'- -CCGCGU------GGUGCU------CGUGCUUGuaGCag -5'
23598 3' -54.2 NC_005261.1 + 92610 0.66 0.95605
Target:  5'- cGGCGCgugccgggGCCcCGGGCGCGAGag-CGg- -3'
miRNA:   3'- -CCGCG--------UGGuGCUCGUGCUUguaGCag -5'
23598 3' -54.2 NC_005261.1 + 92573 0.69 0.830244
Target:  5'- cGCGCGCCGCGcgcccacGCGCGAGCGcagccgcUCG-Cg -3'
miRNA:   3'- cCGCGUGGUGCu------CGUGCUUGU-------AGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.