miRNA display CGI


Results 41 - 60 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 98732 0.66 0.95605
Target:  5'- gGGgGCA-CGCGGccGCGCGGGCGUUGg- -3'
miRNA:   3'- -CCgCGUgGUGCU--CGUGCUUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 106681 0.66 0.95605
Target:  5'- cGCGCGCC-CGAGggcCGCGccGAUcgCGUCc -3'
miRNA:   3'- cCGCGUGGuGCUC---GUGC--UUGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 119891 0.66 0.95605
Target:  5'- gGGCGUguacaccuggcGCCGCGA-CGCGGGCGccaaGUCg -3'
miRNA:   3'- -CCGCG-----------UGGUGCUcGUGCUUGUag--CAG- -5'
23598 3' -54.2 NC_005261.1 + 123692 0.66 0.95605
Target:  5'- cGGCGCucagcguggGCCGCGuacucggccaucAGCA---GCGUCGUCg -3'
miRNA:   3'- -CCGCG---------UGGUGC------------UCGUgcuUGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 127215 0.66 0.95605
Target:  5'- cGGCGCGCgGCuuaAGcCGCGcGCGUCGa- -3'
miRNA:   3'- -CCGCGUGgUGc--UC-GUGCuUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 52802 0.66 0.95605
Target:  5'- uGCGUGCCGCGGGUugGcaAACAggggCGcuUCg -3'
miRNA:   3'- cCGCGUGGUGCUCGugC--UUGUa---GC--AG- -5'
23598 3' -54.2 NC_005261.1 + 41071 0.66 0.95605
Target:  5'- cGGCGCgguccGCCGCcAGCccccgccaguCGAccGCGUCGUCc -3'
miRNA:   3'- -CCGCG-----UGGUGcUCGu---------GCU--UGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 57887 0.66 0.952063
Target:  5'- cGGC-CGgCACGGGgACGGccACcgCGUCg -3'
miRNA:   3'- -CCGcGUgGUGCUCgUGCU--UGuaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 62361 0.66 0.952063
Target:  5'- cGCGCGCCACcAGCucgcgcgccuGCGGcagcgGCAcCGUCg -3'
miRNA:   3'- cCGCGUGGUGcUCG----------UGCU-----UGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 74245 0.66 0.952063
Target:  5'- gGGCGCGCCgaguACGucccauucGCGCGcGCG-CGUCc -3'
miRNA:   3'- -CCGCGUGG----UGCu-------CGUGCuUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 80138 0.66 0.952063
Target:  5'- cGGCGCcgcuACCACcGGCGgCGAACAgccccUCGa- -3'
miRNA:   3'- -CCGCG----UGGUGcUCGU-GCUUGU-----AGCag -5'
23598 3' -54.2 NC_005261.1 + 81193 0.66 0.952063
Target:  5'- cGGgGCACggccgCGCGGGCGCGAGCcggaccacCGUg -3'
miRNA:   3'- -CCgCGUG-----GUGCUCGUGCUUGua------GCAg -5'
23598 3' -54.2 NC_005261.1 + 90463 0.66 0.952063
Target:  5'- uGCGCGCgCACGuGCGCGAgagccuGCucagCGUg -3'
miRNA:   3'- cCGCGUG-GUGCuCGUGCU------UGua--GCAg -5'
23598 3' -54.2 NC_005261.1 + 95390 0.66 0.952063
Target:  5'- cGGCGCGCCGCu--CGCGGcCAUCa-- -3'
miRNA:   3'- -CCGCGUGGUGcucGUGCUuGUAGcag -5'
23598 3' -54.2 NC_005261.1 + 102009 0.66 0.952063
Target:  5'- uGGCGCagcucgccgccGCC-CGAGgcCGCGAACGUCa-- -3'
miRNA:   3'- -CCGCG-----------UGGuGCUC--GUGCUUGUAGcag -5'
23598 3' -54.2 NC_005261.1 + 108038 0.66 0.952063
Target:  5'- cGCGUAgUACGGGUgcagguuuGCGAugGUgGUCg -3'
miRNA:   3'- cCGCGUgGUGCUCG--------UGCUugUAgCAG- -5'
23598 3' -54.2 NC_005261.1 + 132631 0.66 0.952063
Target:  5'- uGGCGCcgaggaCGCGGGCGCGGcggcccuagcgGCcgCGUg -3'
miRNA:   3'- -CCGCGug----GUGCUCGUGCU-----------UGuaGCAg -5'
23598 3' -54.2 NC_005261.1 + 134243 0.66 0.952063
Target:  5'- uGGCGCACgCGCccuGCGCG-GCcgCGUa -3'
miRNA:   3'- -CCGCGUG-GUGcu-CGUGCuUGuaGCAg -5'
23598 3' -54.2 NC_005261.1 + 31826 0.66 0.953686
Target:  5'- cGGCGCGCgCugGcGCGCGccgugcuggccucgcGGCG-CGUCu -3'
miRNA:   3'- -CCGCGUG-GugCuCGUGC---------------UUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 41743 0.66 0.953686
Target:  5'- aGGCGUcuGgcacgacaaacuuguCCACGAGCGCGAgguGCucuucCGUCa -3'
miRNA:   3'- -CCGCG--U---------------GGUGCUCGUGCU---UGua---GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.