Results 81 - 100 of 384 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23598 | 3' | -54.2 | NC_005261.1 | + | 106961 | 0.66 | 0.947841 |
Target: 5'- gGGCGCGCUccgccucgGCGcGCGCGccgcGCAccgCGUCg -3' miRNA: 3'- -CCGCGUGG--------UGCuCGUGCu---UGUa--GCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 104307 | 0.66 | 0.947841 |
Target: 5'- cGCGCGCUcaaaGAGCgcGCGGACGcgcgCGUCc -3' miRNA: 3'- cCGCGUGGug--CUCG--UGCUUGUa---GCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 96595 | 0.66 | 0.947841 |
Target: 5'- cGGCGCucuGCCGC-AGCACGucGCG-CGUg -3' miRNA: 3'- -CCGCG---UGGUGcUCGUGCu-UGUaGCAg -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 87369 | 0.66 | 0.947841 |
Target: 5'- aGCGCccACCGCGcGGCAgauguccuCGGcCGUCGUCu -3' miRNA: 3'- cCGCG--UGGUGC-UCGU--------GCUuGUAGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 81533 | 0.66 | 0.947841 |
Target: 5'- aGGCGCugcaggACCGCguaGAGCAgcgaGAACA-CGUCc -3' miRNA: 3'- -CCGCG------UGGUG---CUCGUg---CUUGUaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 81282 | 0.66 | 0.947841 |
Target: 5'- uGCGCgaGCCG-GAGCGCGGcgcGCA-CGUCc -3' miRNA: 3'- cCGCG--UGGUgCUCGUGCU---UGUaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 77337 | 0.66 | 0.947841 |
Target: 5'- cGGCGCcgccccccGCCAUGAGCGCaguGCAccaggccagcgCGUCu -3' miRNA: 3'- -CCGCG--------UGGUGCUCGUGcu-UGUa----------GCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 135764 | 0.66 | 0.947841 |
Target: 5'- cGGUGCGCUccggcGCaGAGCGCGuGCcgCuGUCg -3' miRNA: 3'- -CCGCGUGG-----UG-CUCGUGCuUGuaG-CAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 119789 | 0.66 | 0.949558 |
Target: 5'- cGCGUACCGC-AGCGCGGagcugggcggcaacuACAUCuUCc -3' miRNA: 3'- cCGCGUGGUGcUCGUGCU---------------UGUAGcAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 15541 | 0.66 | 0.952063 |
Target: 5'- aGGCGUcguUCGCGAcGCGCGGGCAggaggCGa- -3' miRNA: 3'- -CCGCGu--GGUGCU-CGUGCUUGUa----GCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 74245 | 0.66 | 0.952063 |
Target: 5'- gGGCGCGCCgaguACGucccauucGCGCGcGCG-CGUCc -3' miRNA: 3'- -CCGCGUGG----UGCu-------CGUGCuUGUaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 62361 | 0.66 | 0.952063 |
Target: 5'- cGCGCGCCACcAGCucgcgcgccuGCGGcagcgGCAcCGUCg -3' miRNA: 3'- cCGCGUGGUGcUCG----------UGCU-----UGUaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 57887 | 0.66 | 0.952063 |
Target: 5'- cGGC-CGgCACGGGgACGGccACcgCGUCg -3' miRNA: 3'- -CCGcGUgGUGCUCgUGCU--UGuaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 52624 | 0.66 | 0.952063 |
Target: 5'- cGGCGCcuUCGCGcGGUACGGuACA-CGUCu -3' miRNA: 3'- -CCGCGu-GGUGC-UCGUGCU-UGUaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 18703 | 0.66 | 0.952063 |
Target: 5'- cGGCGCACgucgGCGaAGCA--GAgAUCGUCg -3' miRNA: 3'- -CCGCGUGg---UGC-UCGUgcUUgUAGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 14355 | 0.66 | 0.952063 |
Target: 5'- cGGCaGCAgCCGCGgccggggcGGCGCGGuggcccGCAUCGcCa -3' miRNA: 3'- -CCG-CGU-GGUGC--------UCGUGCU------UGUAGCaG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 4481 | 0.66 | 0.952063 |
Target: 5'- cGCgGCGCCGCGGcguagccuGCGCGGGCcccaGUCg -3' miRNA: 3'- cCG-CGUGGUGCU--------CGUGCUUGuag-CAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 2500 | 0.66 | 0.952063 |
Target: 5'- gGGUGguCCGCGAGC-CGcGCcgCGa- -3' miRNA: 3'- -CCGCguGGUGCUCGuGCuUGuaGCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 90260 | 0.66 | 0.952063 |
Target: 5'- gGGCGCcaagguCCugGAGCcCGAgucgggcuuccACGUCGa- -3' miRNA: 3'- -CCGCGu-----GGugCUCGuGCU-----------UGUAGCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 90227 | 0.66 | 0.952063 |
Target: 5'- -uCGCGCgGCGGGCGgGcGCGcCGUCg -3' miRNA: 3'- ccGCGUGgUGCUCGUgCuUGUaGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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