miRNA display CGI


Results 101 - 120 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 121842 0.66 0.945193
Target:  5'- cGGCGCACCGgCGccAGCAgcccgcggcucccgcCGAgccGCAUCGa- -3'
miRNA:   3'- -CCGCGUGGU-GC--UCGU---------------GCU---UGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 84993 0.66 0.94338
Target:  5'- cGGCGCACC-CaGuGCAUGAcggccGCGggGUCg -3'
miRNA:   3'- -CCGCGUGGuG-CuCGUGCU-----UGUagCAG- -5'
23598 3' -54.2 NC_005261.1 + 68127 0.66 0.94338
Target:  5'- cGCGgGCCGCG-GCGCGGcgACcgCGcCg -3'
miRNA:   3'- cCGCgUGGUGCuCGUGCU--UGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 133826 0.66 0.94338
Target:  5'- aGGCGCugCGCGGcCGCGugcGCGcCGUg -3'
miRNA:   3'- -CCGCGugGUGCUcGUGCu--UGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 125301 0.66 0.94338
Target:  5'- gGGCGCcggacCCGCGGGCGCuccGCGgccucggCGUCc -3'
miRNA:   3'- -CCGCGu----GGUGCUCGUGcu-UGUa------GCAG- -5'
23598 3' -54.2 NC_005261.1 + 87369 0.66 0.947841
Target:  5'- aGCGCccACCGCGcGGCAgauguccuCGGcCGUCGUCu -3'
miRNA:   3'- cCGCG--UGGUGC-UCGU--------GCUuGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 96595 0.66 0.947841
Target:  5'- cGGCGCucuGCCGC-AGCACGucGCG-CGUg -3'
miRNA:   3'- -CCGCG---UGGUGcUCGUGCu-UGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 14355 0.66 0.952063
Target:  5'- cGGCaGCAgCCGCGgccggggcGGCGCGGuggcccGCAUCGcCa -3'
miRNA:   3'- -CCG-CGU-GGUGC--------UCGUGCU------UGUAGCaG- -5'
23598 3' -54.2 NC_005261.1 + 4481 0.66 0.952063
Target:  5'- cGCgGCGCCGCGGcguagccuGCGCGGGCcccaGUCg -3'
miRNA:   3'- cCG-CGUGGUGCU--------CGUGCUUGuag-CAG- -5'
23598 3' -54.2 NC_005261.1 + 2500 0.66 0.952063
Target:  5'- gGGUGguCCGCGAGC-CGcGCcgCGa- -3'
miRNA:   3'- -CCGCguGGUGCUCGuGCuUGuaGCag -5'
23598 3' -54.2 NC_005261.1 + 90260 0.66 0.952063
Target:  5'- gGGCGCcaagguCCugGAGCcCGAgucgggcuuccACGUCGa- -3'
miRNA:   3'- -CCGCGu-----GGugCUCGuGCU-----------UGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 90227 0.66 0.952063
Target:  5'- -uCGCGCgGCGGGCGgGcGCGcCGUCg -3'
miRNA:   3'- ccGCGUGgUGCUCGUgCuUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 15541 0.66 0.952063
Target:  5'- aGGCGUcguUCGCGAcGCGCGGGCAggaggCGa- -3'
miRNA:   3'- -CCGCGu--GGUGCU-CGUGCUUGUa----GCag -5'
23598 3' -54.2 NC_005261.1 + 119789 0.66 0.949558
Target:  5'- cGCGUACCGC-AGCGCGGagcugggcggcaacuACAUCuUCc -3'
miRNA:   3'- cCGCGUGGUGcUCGUGCU---------------UGUAGcAG- -5'
23598 3' -54.2 NC_005261.1 + 135764 0.66 0.947841
Target:  5'- cGGUGCGCUccggcGCaGAGCGCGuGCcgCuGUCg -3'
miRNA:   3'- -CCGCGUGG-----UG-CUCGUGCuUGuaG-CAG- -5'
23598 3' -54.2 NC_005261.1 + 118792 0.66 0.947841
Target:  5'- cGGCGCGCUgAUGGcGCACGuggg-CGUCu -3'
miRNA:   3'- -CCGCGUGG-UGCU-CGUGCuuguaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 126948 0.66 0.947841
Target:  5'- aGGgGCGCCGgGcgcgggggcggcAGCGCGAACcgCG-Cg -3'
miRNA:   3'- -CCgCGUGGUgC------------UCGUGCUUGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 107682 0.66 0.947841
Target:  5'- gGGCGUugccGCCGCGGcgggggcgccGC-CGAACGUCGc- -3'
miRNA:   3'- -CCGCG----UGGUGCU----------CGuGCUUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 106961 0.66 0.947841
Target:  5'- gGGCGCGCUccgccucgGCGcGCGCGccgcGCAccgCGUCg -3'
miRNA:   3'- -CCGCGUGG--------UGCuCGUGCu---UGUa--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 104307 0.66 0.947841
Target:  5'- cGCGCGCUcaaaGAGCgcGCGGACGcgcgCGUCc -3'
miRNA:   3'- cCGCGUGGug--CUCG--UGCUUGUa---GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.