Results 21 - 40 of 384 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23598 | 3' | -54.2 | NC_005261.1 | + | 14355 | 0.66 | 0.952063 |
Target: 5'- cGGCaGCAgCCGCGgccggggcGGCGCGGuggcccGCAUCGcCa -3' miRNA: 3'- -CCG-CGU-GGUGC--------UCGUGCU------UGUAGCaG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 4481 | 0.66 | 0.952063 |
Target: 5'- cGCgGCGCCGCGGcguagccuGCGCGGGCcccaGUCg -3' miRNA: 3'- cCG-CGUGGUGCU--------CGUGCUUGuag-CAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 2500 | 0.66 | 0.952063 |
Target: 5'- gGGUGguCCGCGAGC-CGcGCcgCGa- -3' miRNA: 3'- -CCGCguGGUGCUCGuGCuUGuaGCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 90260 | 0.66 | 0.952063 |
Target: 5'- gGGCGCcaagguCCugGAGCcCGAgucgggcuuccACGUCGa- -3' miRNA: 3'- -CCGCGu-----GGugCUCGuGCU-----------UGUAGCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 90227 | 0.66 | 0.952063 |
Target: 5'- -uCGCGCgGCGGGCGgGcGCGcCGUCg -3' miRNA: 3'- ccGCGUGgUGCUCGUgCuUGUaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 15541 | 0.66 | 0.952063 |
Target: 5'- aGGCGUcguUCGCGAcGCGCGGGCAggaggCGa- -3' miRNA: 3'- -CCGCGu--GGUGCU-CGUGCUUGUa----GCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 57887 | 0.66 | 0.952063 |
Target: 5'- cGGC-CGgCACGGGgACGGccACcgCGUCg -3' miRNA: 3'- -CCGcGUgGUGCUCgUGCU--UGuaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 62361 | 0.66 | 0.952063 |
Target: 5'- cGCGCGCCACcAGCucgcgcgccuGCGGcagcgGCAcCGUCg -3' miRNA: 3'- cCGCGUGGUGcUCG----------UGCU-----UGUaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 74245 | 0.66 | 0.952063 |
Target: 5'- gGGCGCGCCgaguACGucccauucGCGCGcGCG-CGUCc -3' miRNA: 3'- -CCGCGUGG----UGCu-------CGUGCuUGUaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 134243 | 0.66 | 0.952063 |
Target: 5'- uGGCGCACgCGCccuGCGCG-GCcgCGUa -3' miRNA: 3'- -CCGCGUG-GUGcu-CGUGCuUGuaGCAg -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 132631 | 0.66 | 0.952063 |
Target: 5'- uGGCGCcgaggaCGCGGGCGCGGcggcccuagcgGCcgCGUg -3' miRNA: 3'- -CCGCGug----GUGCUCGUGCU-----------UGuaGCAg -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 108038 | 0.66 | 0.952063 |
Target: 5'- cGCGUAgUACGGGUgcagguuuGCGAugGUgGUCg -3' miRNA: 3'- cCGCGUgGUGCUCG--------UGCUugUAgCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 102009 | 0.66 | 0.952063 |
Target: 5'- uGGCGCagcucgccgccGCC-CGAGgcCGCGAACGUCa-- -3' miRNA: 3'- -CCGCG-----------UGGuGCUC--GUGCUUGUAGcag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 95390 | 0.66 | 0.952063 |
Target: 5'- cGGCGCGCCGCu--CGCGGcCAUCa-- -3' miRNA: 3'- -CCGCGUGGUGcucGUGCUuGUAGcag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 90463 | 0.66 | 0.952063 |
Target: 5'- uGCGCGCgCACGuGCGCGAgagccuGCucagCGUg -3' miRNA: 3'- cCGCGUG-GUGCuCGUGCU------UGua--GCAg -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 81193 | 0.66 | 0.952063 |
Target: 5'- cGGgGCACggccgCGCGGGCGCGAGCcggaccacCGUg -3' miRNA: 3'- -CCgCGUG-----GUGCUCGUGCUUGua------GCAg -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 80138 | 0.66 | 0.952063 |
Target: 5'- cGGCGCcgcuACCACcGGCGgCGAACAgccccUCGa- -3' miRNA: 3'- -CCGCG----UGGUGcUCGU-GCUUGU-----AGCag -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 119789 | 0.66 | 0.949558 |
Target: 5'- cGCGUACCGC-AGCGCGGagcugggcggcaacuACAUCuUCc -3' miRNA: 3'- cCGCGUGGUGcUCGUGCU---------------UGUAGcAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 118792 | 0.66 | 0.947841 |
Target: 5'- cGGCGCGCUgAUGGcGCACGuggg-CGUCu -3' miRNA: 3'- -CCGCGUGG-UGCU-CGUGCuuguaGCAG- -5' |
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23598 | 3' | -54.2 | NC_005261.1 | + | 126948 | 0.66 | 0.947841 |
Target: 5'- aGGgGCGCCGgGcgcgggggcggcAGCGCGAACcgCG-Cg -3' miRNA: 3'- -CCgCGUGGUgC------------UCGUGCUUGuaGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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