miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 5' -55.5 NC_005261.1 + 29512 0.66 0.911239
Target:  5'- cGCGACGccaug--GCCUGGCuGCAGaGCg -3'
miRNA:   3'- -CGCUGCuagaacaUGGGCCG-CGUC-CG- -5'
23598 5' -55.5 NC_005261.1 + 102444 0.66 0.911239
Target:  5'- uCGGCGcgCc---GCCCGGCcucggcgcGCAGGCg -3'
miRNA:   3'- cGCUGCuaGaacaUGGGCCG--------CGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 109856 0.66 0.911239
Target:  5'- gGUGGCGGcUCcUGggggcagcgggGCCCGcGgGCGGGCg -3'
miRNA:   3'- -CGCUGCU-AGaACa----------UGGGC-CgCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 111730 0.66 0.911239
Target:  5'- uCGACGAgcgCgUGUACgUGaaGUGCGGGCa -3'
miRNA:   3'- cGCUGCUa--GaACAUGgGC--CGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 117165 0.66 0.908828
Target:  5'- uGCaGGCGGUCgccaaggacCCCGGCG-GGGCg -3'
miRNA:   3'- -CG-CUGCUAGaacau----GGGCCGCgUCCG- -5'
23598 5' -55.5 NC_005261.1 + 136582 0.66 0.90514
Target:  5'- -gGGCGggCgcagagacGCCCGGCGCAGcGUg -3'
miRNA:   3'- cgCUGCuaGaaca----UGGGCCGCGUC-CG- -5'
23598 5' -55.5 NC_005261.1 + 55675 0.66 0.90514
Target:  5'- aGCGGCGAUUUUcggccagcacGgcgGCCaCGGCcGCuuGGGCg -3'
miRNA:   3'- -CGCUGCUAGAA----------Ca--UGG-GCCG-CG--UCCG- -5'
23598 5' -55.5 NC_005261.1 + 55258 0.66 0.90514
Target:  5'- cGCGAggaGGUCUgcgcccCCUGGCGCgccggAGGCg -3'
miRNA:   3'- -CGCUg--CUAGAacau--GGGCCGCG-----UCCG- -5'
23598 5' -55.5 NC_005261.1 + 63731 0.66 0.90514
Target:  5'- aGCGGCGugcgCaUG-GCCgcggCGGCGUAGGCc -3'
miRNA:   3'- -CGCUGCua--GaACaUGG----GCCGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 128563 0.66 0.90514
Target:  5'- cGCuGGCGcUCUgggGCCCGguuGCGCuGGCg -3'
miRNA:   3'- -CG-CUGCuAGAacaUGGGC---CGCGuCCG- -5'
23598 5' -55.5 NC_005261.1 + 117524 0.66 0.90514
Target:  5'- aCGAUGAgcgUGUccACCgCGGCGCcggagGGGCu -3'
miRNA:   3'- cGCUGCUagaACA--UGG-GCCGCG-----UCCG- -5'
23598 5' -55.5 NC_005261.1 + 116251 0.66 0.904518
Target:  5'- aCGGCGAUUgggGUcaucacGCCCGGCgGCGucgugauGGCg -3'
miRNA:   3'- cGCUGCUAGaa-CA------UGGGCCG-CGU-------CCG- -5'
23598 5' -55.5 NC_005261.1 + 81581 0.66 0.902635
Target:  5'- aUGACGAcgCUguccucgccgaccGUAUCCGGCGCccgcGGCg -3'
miRNA:   3'- cGCUGCUa-GAa------------CAUGGGCCGCGu---CCG- -5'
23598 5' -55.5 NC_005261.1 + 74890 0.67 0.898807
Target:  5'- gGCGGCGGagUCggcgGCCCG-CGCuGGCc -3'
miRNA:   3'- -CGCUGCU--AGaacaUGGGCcGCGuCCG- -5'
23598 5' -55.5 NC_005261.1 + 81429 0.67 0.898807
Target:  5'- gGCGGCGucGUCggccGCCCcGCGgCGGGCg -3'
miRNA:   3'- -CGCUGC--UAGaacaUGGGcCGC-GUCCG- -5'
23598 5' -55.5 NC_005261.1 + 95652 0.67 0.898807
Target:  5'- cGCGACGcgCggc-GCCgcgacgGGCGCGGGUg -3'
miRNA:   3'- -CGCUGCuaGaacaUGGg-----CCGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 105236 0.67 0.898807
Target:  5'- cGCGGCcguGAUCUgcggcgGcAUCCGcGCGaCAGGCu -3'
miRNA:   3'- -CGCUG---CUAGAa-----CaUGGGC-CGC-GUCCG- -5'
23598 5' -55.5 NC_005261.1 + 70646 0.67 0.898807
Target:  5'- cGCGGCGcugagGUUcgGcGCCgCGGcCGCGGGCc -3'
miRNA:   3'- -CGCUGC-----UAGaaCaUGG-GCC-GCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 89629 0.67 0.898807
Target:  5'- cGCGGCGGcgUCUUccgcGUcUCCGaCGCGGGCc -3'
miRNA:   3'- -CGCUGCU--AGAA----CAuGGGCcGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 34374 0.67 0.898807
Target:  5'- cGCGGCGccgCgcgcagACgCGGCGCAGGa -3'
miRNA:   3'- -CGCUGCua-Gaaca--UGgGCCGCGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.