miRNA display CGI


Results 1 - 20 of 508 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23599 3' -54.9 NC_005261.1 + 132628 0.66 0.927348
Target:  5'- cGCUgGCGCCGaggacGCGGGCGCGgcggcccuagcggcCGCGUg -3'
miRNA:   3'- -CGGaUGCGGU-----UGUUCGCGUa-------------GCGCGu -5'
23599 3' -54.9 NC_005261.1 + 129541 0.66 0.925714
Target:  5'- gGgCUACGCCGcaaggugcaagacgGCGGGCGUAgaggaggaggcggcCGCGCGc -3'
miRNA:   3'- -CgGAUGCGGU--------------UGUUCGCGUa-------------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 57572 0.66 0.925165
Target:  5'- gGCUccgGCGCCGcguUGAGCGCGUCGaUGUg -3'
miRNA:   3'- -CGGa--UGCGGUu--GUUCGCGUAGC-GCGu -5'
23599 3' -54.9 NC_005261.1 + 54994 0.66 0.925165
Target:  5'- gGCC-ACGCCGGCG-GC-C-UCGUGCAc -3'
miRNA:   3'- -CGGaUGCGGUUGUuCGcGuAGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 45150 0.66 0.925165
Target:  5'- gGCC-GCGCCGaggaagugaccuGCGAcGCGUAcCGCGCc -3'
miRNA:   3'- -CGGaUGCGGU------------UGUU-CGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 44859 0.66 0.925165
Target:  5'- aGCCgcgaggaagaGCGCCGccGCGAGCGCcgCGgGgAu -3'
miRNA:   3'- -CGGa---------UGCGGU--UGUUCGCGuaGCgCgU- -5'
23599 3' -54.9 NC_005261.1 + 20813 0.66 0.925165
Target:  5'- cGCCUgguuuACGCgCAGCugaacuGCGCGUuCGCGgGg -3'
miRNA:   3'- -CGGA-----UGCG-GUUGuu----CGCGUA-GCGCgU- -5'
23599 3' -54.9 NC_005261.1 + 18521 0.66 0.925165
Target:  5'- aGCCcGCGUCAAUGacGGCGgCGUCcCGCGg -3'
miRNA:   3'- -CGGaUGCGGUUGU--UCGC-GUAGcGCGU- -5'
23599 3' -54.9 NC_005261.1 + 80086 0.66 0.925165
Target:  5'- ---gACGCgGACcGGCGCG-CGCGCc -3'
miRNA:   3'- cggaUGCGgUUGuUCGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 101385 0.66 0.925165
Target:  5'- cGCCUccuccacggcCGCCAGCAgcAGCGCcgcUUGCGUc -3'
miRNA:   3'- -CGGAu---------GCGGUUGU--UCGCGu--AGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 105186 0.66 0.925165
Target:  5'- cGCCgcCGCCGcgGCAGGCuCGUC-CGCu -3'
miRNA:   3'- -CGGauGCGGU--UGUUCGcGUAGcGCGu -5'
23599 3' -54.9 NC_005261.1 + 103991 0.66 0.925165
Target:  5'- cGCCgcCGCC-GCGgucggccaguauGGCGCG-CGCGCu -3'
miRNA:   3'- -CGGauGCGGuUGU------------UCGCGUaGCGCGu -5'
23599 3' -54.9 NC_005261.1 + 88561 0.66 0.925165
Target:  5'- cCCgaGCGCCGGCGA-CGCGUCcCGCu -3'
miRNA:   3'- cGGa-UGCGGUUGUUcGCGUAGcGCGu -5'
23599 3' -54.9 NC_005261.1 + 35448 0.66 0.925165
Target:  5'- cGCCc-CGCgGGucUAGGCGCggCGCGCGc -3'
miRNA:   3'- -CGGauGCGgUU--GUUCGCGuaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 19874 0.66 0.925165
Target:  5'- aCCc-CGCCGGCGGGCcCGUCGuCGCc -3'
miRNA:   3'- cGGauGCGGUUGUUCGcGUAGC-GCGu -5'
23599 3' -54.9 NC_005261.1 + 2380 0.66 0.925165
Target:  5'- cGCCgcagcgGCGCgcuggCGGCGAGCGCGcccgcgggcccCGCGCGg -3'
miRNA:   3'- -CGGa-----UGCG-----GUUGUUCGCGUa----------GCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 113225 0.66 0.925165
Target:  5'- cGCCguucgaggacuuUGCGCgCAGCAAGUuCG-CGCGCGg -3'
miRNA:   3'- -CGG------------AUGCG-GUUGUUCGcGUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 105353 0.66 0.925165
Target:  5'- gGCCgugagGCagGCCGugACAGGCGgCG-CGCGCGg -3'
miRNA:   3'- -CGGa----UG--CGGU--UGUUCGC-GUaGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 123407 0.66 0.923502
Target:  5'- cGCUUGCcgGCCAggggcgggcucgccACGGGcCGCAgccgcagcUCGCGCAu -3'
miRNA:   3'- -CGGAUG--CGGU--------------UGUUC-GCGU--------AGCGCGU- -5'
23599 3' -54.9 NC_005261.1 + 90737 0.66 0.919534
Target:  5'- gGCC-GCGCCug-AGGCGC-UgGCGCGg -3'
miRNA:   3'- -CGGaUGCGGuugUUCGCGuAgCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.